BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039303
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...    79   3e-13
ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containi...    79   3e-13
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    75   6e-12
ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/73 (50%), Positives = 53/73 (72%)
 Frame = +1

Query: 46  RALFYTNDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYK 225
           R+ F    +T ++ +LY RI PV D ++S+ P+LDQW+ EGR   +D+L +II  LR YK
Sbjct: 16  RSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYK 75

Query: 226 RFRHALEISQWMT 264
           RF+HALEIS+WM+
Sbjct: 76  RFKHALEISKWMS 88


>ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/73 (50%), Positives = 53/73 (72%)
 Frame = +1

Query: 46  RALFYTNDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYK 225
           R+ F    +T ++ +LY RI PV D ++S+ P+LDQW+ EGR   +D+L +II  LR YK
Sbjct: 16  RSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYK 75

Query: 226 RFRHALEISQWMT 264
           RF+HALEIS+WM+
Sbjct: 76  RFKHALEISKWMS 88


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/58 (58%), Positives = 42/58 (72%)
 Frame = +1

Query: 91  LYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYKRFRHALEISQWMT 264
           LY RI PV D  VSIVP+LDQW++EG++  KD L   I  LR+ KR+ HALEIS WM+
Sbjct: 51  LYRRISPVGDPKVSIVPILDQWIEEGKSVNKDQLQVFIKELRYCKRYTHALEISMWMS 108


>ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|222872228|gb|EEF09359.1|
           predicted protein [Populus trichocarpa]
          Length = 501

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
 Frame = +1

Query: 13  TNPKVLL--PRLSRALFYTNDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKD 186
           +NP + L    + RAL ++ DTT + + L  RI  V D  V ++PV+++W++EG+  T  
Sbjct: 7   SNPSLCLHIDGVLRALCFSTDTTAISHSLNRRISMVEDPMVPVIPVIEKWVQEGQVVTNS 66

Query: 187 DLIYIINTLRFYKRFRHALEISQWMT 264
           DL + I  LR   RF HAL+ISQWM+
Sbjct: 67  DLKHFIRKLRKIHRFSHALQISQWMS 92


>ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 461

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 30/58 (51%), Positives = 42/58 (72%)
 Frame = +1

Query: 91  LYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYKRFRHALEISQWMT 264
           LYDRI  VRD   SI P+L+QW++EG+  +K  L  ++  ++ ++RF HALEISQWMT
Sbjct: 24  LYDRIQAVRDPKASISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMT 81