BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039250
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...   132   4e-29
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   127   9e-28
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...   120   9e-26
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...    86   4e-15

>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  162 bits (411), Expect = 2e-38
 Identities = 73/153 (47%), Positives = 110/153 (71%)
 Frame = +2

Query: 2   LIPSIPLSDYNSIIQKLCDFGRVYAAEILFENALDEKSELQDGSYGCMMGILCREGRVKK 181
           L+P + LS+Y+SIIQK+C+ G+ +AA++ F+ A +EK EL + +YGCM+  L ++GRVK+
Sbjct: 308 LLPKLLLSEYDSIIQKICNLGKTHAAQMFFKRARNEKIELDNATYGCMLRALAKDGRVKE 367

Query: 182 AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 361
           A+ VY +I E GVTV    Y AF + +C+E+PS+ V +L+ ++I +GF P G +LSK + 
Sbjct: 368 AIGVYLVILESGVTVKDGCYHAFVNVLCEEDPSQEVSKLMGEIIGKGFSPCGSKLSKFIT 427

Query: 362 DNCKRGRWKEVEDLLNVILDKGISLDVFSCSSL 460
             CK GRW E +DLLNV ++KG+  D F CS+L
Sbjct: 428 SLCKNGRWTEADDLLNVTIEKGLLPDSFCCSAL 460


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score =  132 bits (331), Expect = 4e-29
 Identities = 66/153 (43%), Positives = 98/153 (64%)
 Frame = +2

Query: 2   LIPSIPLSDYNSIIQKLCDFGRVYAAEILFENALDEKSELQDGSYGCMMGILCREGRVKK 181
           L+P  PLS  +S+IQK  D  ++  A + F  A DEK  LQD +YGCM+  L +E RVK+
Sbjct: 302 LLPKCPLSQCDSVIQKFSDLCKMNVATMFFRRACDEKIGLQDATYGCMLKALSKEARVKE 361

Query: 182 AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 361
           A+ +Y +I EKG+ V  ++Y AF D + +E+  E   E+L D++ RGF P  + LSK + 
Sbjct: 362 AIGLYSLISEKGIRVKDSTYHAFLDLLSEEDQYEEGYEILGDMMRRGFRPGTVGLSKFIL 421

Query: 362 DNCKRGRWKEVEDLLNVILDKGISLDVFSCSSL 460
              ++ RW+EVEDLL+++L+KG+  D   C SL
Sbjct: 422 LLSRKRRWREVEDLLDLVLEKGLLPDSLCCCSL 454


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  127 bits (319), Expect = 9e-28
 Identities = 64/153 (41%), Positives = 99/153 (64%)
 Frame = +2

Query: 2   LIPSIPLSDYNSIIQKLCDFGRVYAAEILFENALDEKSELQDGSYGCMMGILCREGRVKK 181
           L+   P SDY+SIIQKLCD G+V AA + F+ A DE+  LQD +YG M+     EG +++
Sbjct: 331 LLSKCPSSDYDSIIQKLCDLGKVSAATLFFKRACDERIGLQDATYGRMLRAFSIEGILEE 390

Query: 182 AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 361
           A+ +Y++I E+G+T+  N+  AF D + +++      E+++D++ RGF P    LSK + 
Sbjct: 391 AIGLYQVILERGLTIKDNASDAFVDLLSEKDQYAEGYEIVRDIMRRGFSPCTSSLSKYIT 450

Query: 362 DNCKRGRWKEVEDLLNVILDKGISLDVFSCSSL 460
             CK+ RWKE E+LL ++L+KG+  D  S  SL
Sbjct: 451 LLCKKRRWKEAEELLYMVLEKGLLPDTLSFCSL 483


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score =  120 bits (302), Expect = 9e-26
 Identities = 63/146 (43%), Positives = 97/146 (66%), Gaps = 3/146 (2%)
 Frame = +2

Query: 32  NSIIQKLCDFGRVYAAEILFENALD-EKSELQDGSYGCMMGILCREGRVKKAMQVYKMIR 208
           + II++LCD G+ +A+E+LF  A + E   L D +YGCM+  L R+ R K+A+ VY+MI 
Sbjct: 329 DKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRMIC 388

Query: 209 EKGVTVSHNS-YRAFADAICQEE-PSEVVDELLKDVIARGFIPHGLELSKLVADNCKRGR 382
            KG+TV   S Y  FA+A+C+++  SE  +ELL DVI RGF+P   +LS+++A  C++ R
Sbjct: 389 RKGITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRGFVPCTHKLSEVLASMCRKRR 448

Query: 383 WKEVEDLLNVILDKGISLDVFSCSSL 460
           WK  E LL+ +++  +  D F+C  L
Sbjct: 449 WKSAEKLLDSVMEMEVYFDSFACGLL 474


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
 Frame = +2

Query: 32  NSIIQKLCDFGRVYAAEILFENALD-EKSELQDGSYGCMMGILCREGRVKKAMQVYKMIR 208
           + II++LCD G+ +A+E+LF  A + E   L D +YGCM+  L R+ R K+A+ VY+MI 
Sbjct: 329 DKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRMIC 388

Query: 209 EKGVTVSHNS-YRAFADAICQEE-PSEVVDELLKDVIARG 322
            KG+TV   S Y  FA+A+C+++  SE  +ELL DVI RG
Sbjct: 389 RKGITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRG 428