BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039205
         (747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_190611.1| pentatricopeptide repeat-containing protein [Ar...   241   9e-62
ref|XP_002522354.1| pentatricopeptide repeat-containing protein,...   237   2e-60
ref|XP_002877745.1| pentatricopeptide repeat-containing protein ...   227   2e-57
ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi...   224   1e-56
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ...   224   1e-56

>ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g50420 gi|6561982|emb|CAB62471.1| putative protein
           [Arabidopsis thaliana] gi|332645144|gb|AEE78665.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 794

 Score =  241 bits (616), Expect = 9e-62
 Identities = 118/249 (47%), Positives = 169/249 (67%), Gaps = 3/249 (1%)
 Frame = +2

Query: 8   LVQNCTSITSLTKARQLHALLILT---TTFQTPYINNNLISMYAKCGSLVDSRNVFDHMP 178
           L + C SIT L +ARQ+HAL++        ++PY NNNLISMY +CGSL  +R VFD MP
Sbjct: 100 LTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMP 159

Query: 179 ERXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGS 358
            R             + P  A YAF L   +  E  +PN++T ++LVQ    + D+LMGS
Sbjct: 160 HRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLMGS 219

Query: 359 ALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKND 538
           +L+S ++K G+ +++VVQTS+LGMYSSCG+LE   ++F+ +  +DA+AWN++I GS+KND
Sbjct: 220 SLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKND 279

Query: 539 RIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQN 718
           +I  GL FF NM+ +G  PTQFTY+++LN CS+L  Y  G++IHA++I ++   D PL N
Sbjct: 280 KIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDN 339

Query: 719 ALVDMYSSC 745
           AL+DMY SC
Sbjct: 340 ALLDMYCSC 348



 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 2/245 (0%)
 Frame = +2

Query: 8    LVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFD--HMPE 181
            ++  C+ + S +  + +HA +I++ +     ++N L+ MY  CG + ++  VF   H P 
Sbjct: 306  VLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPN 365

Query: 182  RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSA 361
                             +QA+  +  L  L +   RP+  T S  + A       + G  
Sbjct: 366  LVSWNSIISGCSENGFGEQAMLMYRRL--LRMSTPRPDEYTFSAAISATAEPERFVHGKL 423

Query: 362  LHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDR 541
            LH  V K G+   + V T+LL MY      E   +VF+ M  +D + W  +I G  +   
Sbjct: 424  LHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGN 483

Query: 542  IRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNA 721
                + FF  M R       F+ + ++ ACS +     G+V H   I+        +  A
Sbjct: 484  SELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGA 543

Query: 722  LVDMY 736
            LVDMY
Sbjct: 544  LVDMY 548



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 3/248 (1%)
 Frame = +2

Query: 2   TTLVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPE 181
           T+LVQ C  +  +     L++ +I         +  +++ MY+ CG L  +R +FD +  
Sbjct: 203 TSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNN 262

Query: 182 RXXXXXXXXXXXXXKQP--QQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMG 355
           R             K    +  +  F     +L+    P   T S ++     +G   +G
Sbjct: 263 RDAVAWNTMIVGSLKNDKIEDGLMFFR---NMLMSGVDPTQFTYSIVLNGCSKLGSYSLG 319

Query: 356 SALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKN 535
             +H+ ++      D+ +  +LL MY SCG++     VF  +   + ++WNS+I G  +N
Sbjct: 320 KLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSEN 379

Query: 536 DRIRQGLTFFSNMVRAGF-GPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPL 712
               Q +  +  ++R     P ++T++  ++A +    ++ G+++H QV K        +
Sbjct: 380 GFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFV 439

Query: 713 QNALVDMY 736
              L+ MY
Sbjct: 440 GTTLLSMY 447



 Score = 72.4 bits (176), Expect = 9e-11
 Identities = 46/194 (23%), Positives = 87/194 (44%)
 Frame = +2

Query: 98   YINNNLISMYAKCGSLVDSRNVFDHMPERXXXXXXXXXXXXXKQPQQAIYAFELLPKLLL 277
            ++   L+SMY K      ++ VFD M ER             +     + A +   ++  
Sbjct: 438  FVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSEL-AVQFFIEMYR 496

Query: 278  EEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEY 457
            E++R +  +LS+++ A   +  +  G   H + ++ GF   + V  +L+ MY   G  E 
Sbjct: 497  EKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYET 556

Query: 458  GVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNMVRAGFGPTQFTYTMILNACSR 637
               +F+     D   WNS++    ++  + + L+FF  ++  GF P   TY  +L ACS 
Sbjct: 557  AETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSH 616

Query: 638  LRYYISGQVIHAQV 679
                + G+ +  Q+
Sbjct: 617  RGSTLQGKFLWNQM 630


>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 704

 Score =  237 bits (604), Expect = 2e-60
 Identities = 120/250 (48%), Positives = 163/250 (65%), Gaps = 4/250 (1%)
 Frame = +2

Query: 8   LVQNCTSITSLTKARQLHALLILTTTF----QTPYINNNLISMYAKCGSLVDSRNVFDHM 175
           L++ CT+I SL KARQLHAL++ TT      Q+PY+NNNLI+MYA CGS  D++ +FD M
Sbjct: 10  LIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDRM 69

Query: 176 PERXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMG 355
           P +             +       +F+L   + ++  RPN  T ++L+Q    + D  +G
Sbjct: 70  PRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDWFLG 129

Query: 356 SALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKN 535
           S LH  V+++G+ NDI VQT LLGMYS CG+LE   +VF   V KD + WNS+I G +KN
Sbjct: 130 STLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKN 189

Query: 536 DRIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQ 715
           DRI++ L+ F  MVR+G   TQFT +M LNACS+L YY  G++IHAQVI +N  PD+ LQ
Sbjct: 190 DRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSALQ 249

Query: 716 NALVDMYSSC 745
           NAL+DMY SC
Sbjct: 250 NALLDMYYSC 259



 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 1/246 (0%)
 Frame = +2

Query: 2   TTLVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPE 181
           T+L+Q C  +        LH  ++         +   L+ MY+ CG L  +  VF +  E
Sbjct: 114 TSLLQVCCLLEDWFLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVE 173

Query: 182 RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSA 361
           +             K   +   +  L  +++         T S  + A   +G    G  
Sbjct: 174 KDDVFWNSMISGYLKN-DRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRI 232

Query: 362 LHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDR 541
           +H+ V+      D  +Q +LL MY SCG+    + +F+ + +   I+WNS+I    KN+ 
Sbjct: 233 IHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEE 292

Query: 542 IRQGLTFFSNMV-RAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQN 718
             + +  F  ++  +   P ++T+T I++A    R    GQ +HAQVIK        + N
Sbjct: 293 GEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGN 352

Query: 719 ALVDMY 736
           AL+ MY
Sbjct: 353 ALLSMY 358



 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 59/246 (23%), Positives = 105/246 (42%)
 Frame = +2

Query: 2    TTLVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPE 181
            T ++       +    + LHA +I      + +I N L+SMY +   +  +R VF  M E
Sbjct: 317  TAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEE 376

Query: 182  RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSA 361
            +             +       A +L  K+  E H+ ++  LS  +     +  +  G  
Sbjct: 377  KDVVLWTEMIMGHCRLGDGES-AIKLFCKMRQEGHKSDSFALSGALSVCADLAILKQGQM 435

Query: 362  LHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDR 541
            LH+  VK G   +I V  SL+ MY+  GNL+    +F+ +   D   WNS+I G   +  
Sbjct: 436  LHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCWNSMIGGYSHHGM 495

Query: 542  IRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNA 721
              + +  F+ ++  G  P Q T+  +L+AC+       G+ +   + KN   P     + 
Sbjct: 496  AEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKKNGITPGPKHYSC 555

Query: 722  LVDMYS 739
            +V + S
Sbjct: 556  MVSLLS 561



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 1/241 (0%)
 Frame = +2

Query: 20  CTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPERXXXXX 199
           C+ +   ++ R +HA +I++       + N L+ MY  CG    +  +F  +        
Sbjct: 221 CSKLGYYSQGRIIHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISW 280

Query: 200 XXXXXXXXKQPQQAIYAFELLPKLL-LEEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMV 376
                   K  ++   A  L  KLL +   +P+  T + ++ A         G  LH+ V
Sbjct: 281 NSMISWFAKN-EEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQV 339

Query: 377 VKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGL 556
           +K G    + +  +LL MY    ++E    VF+ M  KD + W  +I G  +       +
Sbjct: 340 IKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAI 399

Query: 557 TFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNALVDMY 736
             F  M + G     F  +  L+ C+ L     GQ++H Q +K     +  +  +LVDMY
Sbjct: 400 KLFCKMRQEGHKSDSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMY 459

Query: 737 S 739
           +
Sbjct: 460 A 460


>ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323583|gb|EFH54004.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 764

 Score =  227 bits (578), Expect = 2e-57
 Identities = 115/252 (45%), Positives = 170/252 (67%), Gaps = 6/252 (2%)
 Frame = +2

Query: 8   LVQNCTSITSLTKARQLHALLILT---TTFQTPYINNNLISMYAKCGSLVDSRNVFDHMP 178
           L + C SIT+L +A QLHA+++     +  ++PY NNNLISMY +CGSL  +R +FD MP
Sbjct: 13  LTRKCVSITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMP 72

Query: 179 ERXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGS 358
           ER             +    A YAF L+ ++  E  +PN++T ++LVQ    + D+LMGS
Sbjct: 73  ERNVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGS 132

Query: 359 ALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKND 538
            LHS ++K G+ +++VVQTS+LGMYSSCG+LE   ++F  +   DA+AWN++I G  +ND
Sbjct: 133 LLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRND 192

Query: 539 RIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRL---RYYISGQVIHAQVIKNNEPPDTP 709
           +I  GL  F +M+ +G  PTQFTY+M+LNACS+L   RY + G++IHA++I ++   D P
Sbjct: 193 KIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSV-GKLIHARMIVSDILADLP 251

Query: 710 LQNALVDMYSSC 745
           ++NAL+DMY SC
Sbjct: 252 VENALLDMYCSC 263



 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 2/229 (0%)
 Frame = +2

Query: 56  LHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFD--HMPERXXXXXXXXXXXXXKQ 229
           +HA +I++       + N L+ MY  CG + ++  VF   H P                 
Sbjct: 237 IHARMIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGF 296

Query: 230 PQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFCNDIVV 409
            +QAI  +  L  L +   RP+  T S  + A       + G  LH  V K G+   + V
Sbjct: 297 GEQAILMYRRL--LRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFV 354

Query: 410 QTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNMVRAGF 589
            T+LL MY   G  E   +VF  +  +D + W  +I G  +       +  F  M R   
Sbjct: 355 GTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSECAVQLFIEMYREKN 414

Query: 590 GPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNALVDMY 736
               F+ + +L ACS +     GQV H+  IK        +  ALVDMY
Sbjct: 415 RTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMY 463



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 3/248 (1%)
 Frame = +2

Query: 2   TTLVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPE 181
           T+LVQ CT +  +     LH+ +I         +  +++ MY+ CG L  +R +F+ +  
Sbjct: 116 TSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNG 175

Query: 182 RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGD--MLMG 355
                         +   +      L   +L+    P   T S ++ A   +G     +G
Sbjct: 176 GDAVAWNTMIVGIFRN-DKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVG 234

Query: 356 SALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKN 535
             +H+ ++      D+ V+ +LL MY SCG+++    VF  +   + ++WNS+I G  +N
Sbjct: 235 KLIHARMIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSEN 294

Query: 536 DRIRQGLTFFSNMVRAGF-GPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPL 712
               Q +  +  ++R     P ++T++  + A +    +I G+++H QV K        +
Sbjct: 295 GFGEQAILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFV 354

Query: 713 QNALVDMY 736
              L+ MY
Sbjct: 355 GTTLLSMY 362



 Score = 76.3 bits (186), Expect = 6e-12
 Identities = 46/179 (25%), Positives = 83/179 (46%)
 Frame = +2

Query: 98  YINNNLISMYAKCGSLVDSRNVFDHMPERXXXXXXXXXXXXXKQPQQAIYAFELLPKLLL 277
           ++   L+SMY K G    ++ VF  + ER             +       A +L  ++  
Sbjct: 353 FVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSEC-AVQLFIEMYR 411

Query: 278 EEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEY 457
           E++R +  +LS+++ A   +  +  G   HS+ +K GF N + V  +L+ MY   G  E 
Sbjct: 412 EKNRTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYET 471

Query: 458 GVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNMVRAGFGPTQFTYTMILNACS 634
              +F+ +   D   WNS++    ++  + +  +FF  ++  GF P   TY  +L ACS
Sbjct: 472 AESIFSLVSNPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTYLSLLAACS 530


>ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  224 bits (571), Expect = 1e-56
 Identities = 120/248 (48%), Positives = 164/248 (66%), Gaps = 4/248 (1%)
 Frame = +2

Query: 5   TLVQNCTSITSLTKARQLHALLILTTTF---QTPYINNNLISMYAKCGSLVDSRNVFDHM 175
           +L+Q C+++TSL +ARQLHAL++ TTT    Q+P++ NN++SMYA+CGSL DS  VFD M
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 176 PERXXXXXXXXXXXXXK-QPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLM 352
           P R             +  P  AI A EL  +++    RP++TT ++L+QA+  +     
Sbjct: 75  PRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWF 134

Query: 353 GSALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMK 532
           GS+LH+   K G  NDI +QTSLL MYS+CG+L     VF  MV +D +AWNS+I G +K
Sbjct: 135 GSSLHAKGFKLGL-NDICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLK 193

Query: 533 NDRIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPL 712
           N++I +G+  F  M+  GF PTQFTY M+LN+CSRL+ Y SG++IHA VI  N   D  L
Sbjct: 194 NNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHL 253

Query: 713 QNALVDMY 736
           QNALVDMY
Sbjct: 254 QNALVDMY 261



 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 2/246 (0%)
 Frame = +2

Query: 8   LVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHM--PE 181
           ++ +C+ +      R +HA +I+       ++ N L+ MY   G++  +  +F  M  P+
Sbjct: 222 VLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPD 281

Query: 182 RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSA 361
                         +  ++A+  F  L ++     +P++ T + ++ A         G +
Sbjct: 282 LVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFP--KPDDYTYAGIISATGVFPSSSYGKS 339

Query: 362 LHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDR 541
           LH+ V+K GF   + V ++L+ MY      +   +VF  + VKD + W  +I G  K   
Sbjct: 340 LHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKMTD 399

Query: 542 IRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNA 721
               +  F  MV  G     +  + ++NAC+ L     G++IH   +K     +  +  +
Sbjct: 400 GICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGS 459

Query: 722 LVDMYS 739
           L+DMY+
Sbjct: 460 LIDMYA 465



 Score = 80.1 bits (196), Expect = 4e-13
 Identities = 54/211 (25%), Positives = 97/211 (45%)
 Frame = +2

Query: 35  SLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPERXXXXXXXXXX 214
           S +  + LHA +I T   ++ ++ + L+SMY K      +  VF  +  +          
Sbjct: 333 SSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMIT 392

Query: 215 XXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFC 394
              K     I A     +++ E H  ++  LS +V A  ++  +  G  +H   VK G+ 
Sbjct: 393 GYSKMTD-GICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYD 451

Query: 395 NDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNM 574
            ++ V  SL+ MY+  G+LE    VF+ +   D   WNS++ G   +  + + L  F  +
Sbjct: 452 VEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEI 511

Query: 575 VRAGFGPTQFTYTMILNACSRLRYYISGQVI 667
           ++ G  P Q T+  +L+ACS  R    G+ +
Sbjct: 512 LKQGLIPDQVTFLSLLSACSHSRLVEQGKFL 542



 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 3/215 (1%)
 Frame = +2

Query: 101 INNNLISMYAKCGSLVDSRNVFDHMPERXXXXXXXXXXXXXKQP--QQAIYAFELLPKLL 274
           +  +L++MY+ CG L  +  VF  M +R             K    ++ I+ F    K++
Sbjct: 152 LQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLFI---KMM 208

Query: 275 LEEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLE 454
                P   T   ++ +   + D   G  +H+ V+      D+ +Q +L+ MY + GN++
Sbjct: 209 SVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQ 268

Query: 455 YGVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNMVRAGF-GPTQFTYTMILNAC 631
              ++F+ M   D ++WNS+I G  +N+   + +  F  +    F  P  +TY  I++A 
Sbjct: 269 TAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIISAT 328

Query: 632 SRLRYYISGQVIHAQVIKNNEPPDTPLQNALVDMY 736
                   G+ +HA+VIK        + + LV MY
Sbjct: 329 GVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMY 363



 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
 Frame = +2

Query: 311 NLVQAAYSVGDMLMGSALHSMVVKYGFC---NDIVVQTSLLGMYSSCGNLEYGVQVFNGM 481
           +L+Q   +V  +     LH++++            V  ++L MY+ CG+L     VF+ M
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 482 VVKDAIAWNSVI--FGSMKNDRIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYIS 655
             +  +++N+++  +     +     L  ++ MV  G  P+  T+T +L A S L ++  
Sbjct: 75  PRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWF 134

Query: 656 GQVIHAQVIKNNEPPDTPLQNALVDMYSSC 745
           G  +HA+  K     D  LQ +L++MYS+C
Sbjct: 135 GSSLHAKGFKLGLN-DICLQTSLLNMYSNC 163


>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355513169|gb|AES94792.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 985

 Score =  224 bits (571), Expect = 1e-56
 Identities = 120/249 (48%), Positives = 164/249 (65%), Gaps = 4/249 (1%)
 Frame = +2

Query: 2    TTLVQNCTSITSLTKARQLHALLILTTTF---QTPYINNNLISMYAKCGSLVDSRNVFDH 172
            T L++ C   TSL +ARQLHALL+ TT     ++ ++ NN+ISMY++CGSL D+  VFD 
Sbjct: 283  TLLLKKCRITTSLQEARQLHALLLTTTNASGSKSAFLYNNIISMYSRCGSLEDAHQVFDK 342

Query: 173  MPERXXXXXXXXXXXXXKQPQQ-AIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDML 349
            MP+R             +  +Q  +YAF L  ++     RP+N T+++L+QAA   GD+L
Sbjct: 343  MPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTITSLLQAASLHGDLL 402

Query: 350  MGSALHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSM 529
            +G  LH+  +K+GF NDI VQTSLL MYSSC +L     VF  M  +D +AWNS+I G +
Sbjct: 403  IGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVAWNSLILGYL 462

Query: 530  KNDRIRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTP 709
            KND+I +G+  F  M+  GF PT +T+ MIL+ACSRL+ Y SG++IHA+VI  N  PD  
Sbjct: 463  KNDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARVIVGNVSPDLH 522

Query: 710  LQNALVDMY 736
            LQNALVDMY
Sbjct: 523  LQNALVDMY 531



 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 2/246 (0%)
 Frame = +2

Query: 8    LVQNCTSITSLTKARQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMP--E 181
            ++  C+ +      R +HA +I+       ++ N L+ MY   G    +  +F  M   +
Sbjct: 492  ILSACSRLKDYFSGRLIHARVIVGNVSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWD 551

Query: 182  RXXXXXXXXXXXXXKQPQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSA 361
                          +  ++A+  F  L  L     +P++ T + ++ A  +      G  
Sbjct: 552  LVSWNSMISGYFENEDGEKAMNLFVQLKALCFP--KPDDYTYAGIISATGAFPCFSYGKP 609

Query: 362  LHSMVVKYGFCNDIVVQTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDR 541
            LH  V+K GF   + V ++L+ MY      E  ++VF  +  KDAI W  +I G  K   
Sbjct: 610  LHGQVIKAGFVRSVFVGSTLVSMYFKNQETEAALRVFCSIPGKDAILWTEMITGYSKMAD 669

Query: 542  IRQGLTFFSNMVRAGFGPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNA 721
                +  FS M         +  + +L+ C+ L     G++IH    K     +  +  +
Sbjct: 670  GMGAIRCFSEMHHEVHEIDDYVLSGVLSVCAYLAILRQGEIIHCYAYKLGYDVEMSVSGS 729

Query: 722  LVDMYS 739
            L+DMY+
Sbjct: 730  LIDMYA 735



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 49/206 (23%), Positives = 90/206 (43%)
 Frame = +2

Query: 50   RQLHALLILTTTFQTPYINNNLISMYAKCGSLVDSRNVFDHMPERXXXXXXXXXXXXXKQ 229
            + LH  +I     ++ ++ + L+SMY K      +  VF  +P +             K 
Sbjct: 608  KPLHGQVIKAGFVRSVFVGSTLVSMYFKNQETEAALRVFCSIPGKDAILWTEMITGYSKM 667

Query: 230  PQQAIYAFELLPKLLLEEHRPNNTTLSNLVQAAYSVGDMLMGSALHSMVVKYGFCNDIVV 409
                + A     ++  E H  ++  LS ++     +  +  G  +H    K G+  ++ V
Sbjct: 668  AD-GMGAIRCFSEMHHEVHEIDDYVLSGVLSVCAYLAILRQGEIIHCYAYKLGYDVEMSV 726

Query: 410  QTSLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVIFGSMKNDRIRQGLTFFSNMVRAGF 589
              SL+ MY+  GNLE    VF+ +   D   WNS++ G   +  +   L  F  +++ G 
Sbjct: 727  SGSLIDMYAKNGNLEAAYLVFSQVSHPDLKCWNSMLGGFSHHGMVDDALKLFEEIIKQGL 786

Query: 590  GPTQFTYTMILNACSRLRYYISGQVI 667
             P Q T+  +L+ACS  R    G+++
Sbjct: 787  VPDQVTFLSLLSACSHSRLVEQGKLL 812



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
 Frame = +2

Query: 416 SLLGMYSSCGNLEYGVQVFNGMVVKDAIAWNSVI--FGSMKNDRIRQGLTFFSNMVRAGF 589
           +++ MYS CG+LE   QVF+ M  +  +++N+++  +  +           ++ M   G 
Sbjct: 322 NIISMYSRCGSLEDAHQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGL 381

Query: 590 GPTQFTYTMILNACSRLRYYISGQVIHAQVIKNNEPPDTPLQNALVDMYSSC 745
            P+  T T +L A S     + G ++HA+ +K     D  +Q +L++MYSSC
Sbjct: 382 RPSNMTITSLLQAASLHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSC 433