BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039193
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002878760.1| hypothetical protein ARALYDRAFT_900985 [Arab...    57   2e-06
dbj|BAJ97626.1| predicted protein [Hordeum vulgare subsp. vulgare]     57   2e-06
ref|XP_003635769.1| RING finger-like protein [Medicago truncatul...    57   2e-06
ref|NP_180024.1| C3HC4-type RING finger domain-containing protei...    57   2e-06
ref|XP_003581575.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-...    56   3e-06

>ref|XP_002878760.1| hypothetical protein ARALYDRAFT_900985 [Arabidopsis lyrata subsp.
           lyrata] gi|297324599|gb|EFH55019.1| hypothetical protein
           ARALYDRAFT_900985 [Arabidopsis lyrata subsp. lyrata]
          Length = 203

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = -3

Query: 272 SGSLPNKVPDTSAADE----CGICLEILTKEKDWILIPGCQHRFHEGCICGWVRSSGNTC 105
           S SL   +   S  +E    C ICLE L++ +D+  +P C H FHE C+  WV    N+C
Sbjct: 135 SASLATDLDQESQEEEESKTCAICLENLSRSEDYCQMPYCSHCFHERCVTKWVVGHNNSC 194

Query: 104 PICK 93
           P+C+
Sbjct: 195 PLCR 198


>dbj|BAJ97626.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 241

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 21/52 (40%), Positives = 35/52 (67%)
 Frame = -3

Query: 236 AADECGICLEILTKEKDWILIPGCQHRFHEGCICGWVRSSGNTCPICKTILI 81
           A D+C +CL  + +E+D   +P C HRFHE CI  W+++   TCP+C+ +++
Sbjct: 173 AEDKCCVCLAGMREEQDLRDLPRCGHRFHEKCIGKWLKTGHPTCPVCRALVL 224


>ref|XP_003635769.1| RING finger-like protein [Medicago truncatula]
           gi|355501704|gb|AES82907.1| RING finger-like protein
           [Medicago truncatula]
          Length = 127

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/66 (39%), Positives = 40/66 (60%)
 Frame = -3

Query: 287 KISQQSGSLPNKVPDTSAADECGICLEILTKEKDWILIPGCQHRFHEGCICGWVRSSGNT 108
           K  ++S ++ N +       EC +CL +L  E+   L+P C+H FH GCI  W+ +S +T
Sbjct: 56  KQQEESNNVSNNIV------ECAVCLSLLQDEEMMRLLPNCKHSFHVGCIDKWL-ASHST 108

Query: 107 CPICKT 90
           CPIC+T
Sbjct: 109 CPICRT 114


>ref|NP_180024.1| C3HC4-type RING finger domain-containing protein [Arabidopsis
           thaliana] gi|4337205|gb|AAD18119.1| hypothetical protein
           [Arabidopsis thaliana] gi|330252490|gb|AEC07584.1|
           C3HC4-type RING finger domain-containing protein
           [Arabidopsis thaliana]
          Length = 198

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 34/53 (64%)
 Frame = -3

Query: 251 VPDTSAADECGICLEILTKEKDWILIPGCQHRFHEGCICGWVRSSGNTCPICK 93
           V     ++ C ICLE +++ +++  +P C+H +HEGC+  WV    N+CP+C+
Sbjct: 141 VDQEEESETCAICLENMSRSENYCQMPYCKHCYHEGCVTKWVIGHNNSCPLCR 193


>ref|XP_003581575.1| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Brachypodium
           distachyon]
          Length = 359

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = -3

Query: 266 SLPNKVPDTSAADECGICLEILTKEKDWILIPGCQHRFHEGCICGWVRSSGNTCPICK 93
           +LP   PD      C +CL   T + +  L+P C+H FH  C+  W+R++  TCP+C+
Sbjct: 116 ALPKSSPD------CAVCLSPFTPDAELRLLPACRHAFHAACVDAWLRAAAPTCPLCR 167