BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039136
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EKX44979.1| high mobility group box fusion protein [Guillardi...   117   7e-25
gb|AFQ55276.1| URT reporter protein [URT cloning vector pKP77]        117   7e-25
gb|ADD52202.1| ubiquitin [Catharanthus roseus] gi|341869050|gb|A...   117   7e-25
ref|XP_002616343.1| ubiquitin [Clavispora lusitaniae ATCC 42720]...   117   1e-24
ref|XP_001271126.1| ubiquitin-40S ribosomal protein S31 fusion p...   117   1e-24

>gb|EKX44979.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
          Length = 188

 Score =  117 bits (294), Expect = 7e-25
 Identities = 65/131 (49%), Positives = 79/131 (60%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT  ++K+KIQDKEGIPPDQQ+L FAGK+LEDG+TLAD N
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 253 IQNGSVVFLILRLRGGGNTLYIASQYVHSDGSTVSDDEMYDTAPTSPSVEMVQNQIREPR 432
           IQ  S + L+LRLRGG                   DDE        P   +V  Q  EP+
Sbjct: 61  IQKESTLHLVLRLRGGAG----------------DDDEKRPKRDKKPVERLVAQQAPEPK 104

Query: 433 AEMVQNQLGEP 465
               +     P
Sbjct: 105 KRAAKKSDAAP 115


>gb|AFQ55276.1| URT reporter protein [URT cloning vector pKP77]
          Length = 361

 Score =  117 bits (294), Expect = 7e-25
 Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
 Frame = +1

Query: 70  TMEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADC 249
           TM+IFVKTLTGK IT+EV+SSDT   +K+KIQDKEGIPPDQQ+L FAG++LEDG+TL+D 
Sbjct: 245 TMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDY 304

Query: 250 NIQNGSVVFLILRLRGGGNTLYIASQYVHSD----GSTVSDDE 366
           NIQ  S + L+LRLRGG +     S Y   D    GS   DD+
Sbjct: 305 NIQKESTLHLVLRLRGGRDLGLSGSDYKDDDDKGSGSDYKDDD 347


>gb|ADD52202.1| ubiquitin [Catharanthus roseus] gi|341869050|gb|AEK98798.1|
           ubiquitin [Carthamus tinctorius]
          Length = 381

 Score =  117 bits (294), Expect = 7e-25
 Identities = 57/76 (75%), Positives = 66/76 (86%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT   +K KIQDKEGIPPDQQ+L FAGK+LEDG+TLADCN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADCN 136

Query: 253 IQNGSVVFLILRLRGG 300
           IQ  S + L+LRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  113 bits (282), Expect = 2e-23
 Identities = 56/76 (73%), Positives = 65/76 (85%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT   +K KIQDKEGIPPDQQ+L FAGK+LEDG+TLAD N
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 253 IQNGSVVFLILRLRGG 300
           IQ  S + L+LRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score =  113 bits (282), Expect = 2e-23
 Identities = 56/76 (73%), Positives = 65/76 (85%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT   +K KIQDKEGIPPDQQ+L FAGK+LEDG+TLAD N
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 253 IQNGSVVFLILRLRGG 300
           IQ  S + L+LRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  111 bits (277), Expect = 7e-23
 Identities = 55/76 (72%), Positives = 64/76 (84%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT   +K K QDKEGIPPDQQ+L FAGK+LEDG+TLAD N
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKTQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 253 IQNGSVVFLILRLRGG 300
           IQ  S + L+LRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/76 (72%), Positives = 64/76 (84%)
 Frame = +1

Query: 73  MEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIPPDQQKLAFAGKRLEDGQTLADCN 252
           M+IFVKTLTGK IT+EV+SSDT   +K KIQDKEGIPPDQQ+L  AGK+LEDG+TLAD N
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLADYN 364

Query: 253 IQNGSVVFLILRLRGG 300
           IQ  S + L+LRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380


>ref|XP_002616343.1| ubiquitin [Clavispora lusitaniae ATCC 42720]
           gi|238849992|gb|EEQ39456.1| ubiquitin [Clavispora
           lusitaniae ATCC 42720]
          Length = 183

 Score =  117 bits (293), Expect = 1e-24
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 4/105 (3%)
 Frame = +1

Query: 1   FHHNLTKVLILIPPPSLRIQE----E*TMEIFVKTLTGKAITIEVQSSDTAAILKTKIQD 168
           FH   T +  L PP  +R +     +  M+IFVKTLTGK IT+EV+SSDT   +K+KIQD
Sbjct: 6   FHCPRTYLNFLFPPLLVRKKHLSCRQADMQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 65

Query: 169 KEGIPPDQQKLAFAGKRLEDGQTLADCNIQNGSVVFLILRLRGGG 303
           KEGIPPDQQ+L FAGK+LEDG+TL+D NIQ  S + L+LRLRGGG
Sbjct: 66  KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 110


>ref|XP_001271126.1| ubiquitin-40S ribosomal protein S31 fusion protein [Aspergillus
           clavatus NRRL 1] gi|119399272|gb|EAW09700.1| ubiquitin
           [Aspergillus clavatus NRRL 1]
          Length = 173

 Score =  117 bits (292), Expect = 1e-24
 Identities = 62/100 (62%), Positives = 75/100 (75%)
 Frame = +1

Query: 4   HHNLTKVLILIPPPSLRIQEE*TMEIFVKTLTGKAITIEVQSSDTAAILKTKIQDKEGIP 183
           H NL   L+    PS +      M+IFVKTLTGK IT+EV+SSDT   +K+KIQDKEGIP
Sbjct: 3   HMNLLSHLVPGASPSFK------MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 56

Query: 184 PDQQKLAFAGKRLEDGQTLADCNIQNGSVVFLILRLRGGG 303
           PDQQ+L FAGK+LEDG+TL+D NIQ  S + L+LRLRGGG
Sbjct: 57  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 96