BLASTX nr result

ID: Coptis25_contig00039124 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039124
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266327.1| PREDICTED: uncharacterized protein LOC100265...   123   2e-26
ref|XP_002266916.1| PREDICTED: uncharacterized protein LOC100242...   122   4e-26
emb|CAN62212.1| hypothetical protein VITISV_011167 [Vitis vinifera]   122   4e-26
ref|XP_002316430.1| SAUR family protein [Populus trichocarpa] gi...   115   5e-24
gb|AFK41725.1| unknown [Lotus japonicus]                              112   3e-23

>ref|XP_002266327.1| PREDICTED: uncharacterized protein LOC100265117 [Vitis vinifera]
          Length = 173

 Score =  123 bits (308), Expect = 2e-26
 Identities = 70/108 (64%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
 Frame = +3

Query: 33  MDSKKS-KISEIVKLQQILKKWRKLANVXXXXXXXXXXXXXXXXXHPCSNKSIKFLKKTL 209
           MDSKKS KISEIV+LQQILKKW+KLAN                  +  S KSIKFLKKTL
Sbjct: 1   MDSKKSNKISEIVRLQQILKKWKKLANAPRNSNKNGSHSSTSSSSNNGS-KSIKFLKKTL 59

Query: 210 SFSDNSVLASTSDIVPKGFLAVCVGKELKKFIIPMEYLGHRAFGILLQ 353
           SF+D S + ST ++VPKGFLAVCVGKELK+FIIP EYLGH+AFG+LL+
Sbjct: 60  SFTDTSSMLST-EVVPKGFLAVCVGKELKRFIIPTEYLGHQAFGVLLR 106


>ref|XP_002266916.1| PREDICTED: uncharacterized protein LOC100242742 [Vitis vinifera]
          Length = 177

 Score =  122 bits (305), Expect = 4e-26
 Identities = 69/108 (63%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
 Frame = +3

Query: 33  MDSKKS-KISEIVKLQQILKKWRKLANVXXXXXXXXXXXXXXXXXHPCSNKSIKFLKKTL 209
           MDSKKS KISEIV+LQQILKKW+KLAN                  +  S KSIKFLKKTL
Sbjct: 1   MDSKKSNKISEIVRLQQILKKWKKLANAPKNSNKNGSHSSTSSSSNNGS-KSIKFLKKTL 59

Query: 210 SFSDNSVLASTSDIVPKGFLAVCVGKELKKFIIPMEYLGHRAFGILLQ 353
           SF+D + + ST ++VPKGFLAVCVGKELK+FIIP EYLGH+AFG+LL+
Sbjct: 60  SFTDTTSMLST-EVVPKGFLAVCVGKELKRFIIPTEYLGHQAFGVLLR 106


>emb|CAN62212.1| hypothetical protein VITISV_011167 [Vitis vinifera]
          Length = 177

 Score =  122 bits (305), Expect = 4e-26
 Identities = 69/108 (63%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
 Frame = +3

Query: 33  MDSKKS-KISEIVKLQQILKKWRKLANVXXXXXXXXXXXXXXXXXHPCSNKSIKFLKKTL 209
           MDSKKS KISEIV+LQQILKKW+KLAN                  +  S KSIKFLKKTL
Sbjct: 1   MDSKKSNKISEIVRLQQILKKWKKLANAPKNSNKNGSHGSTSSSSNNGS-KSIKFLKKTL 59

Query: 210 SFSDNSVLASTSDIVPKGFLAVCVGKELKKFIIPMEYLGHRAFGILLQ 353
           SF+D + + ST ++VPKGFLAVCVGKELK+FIIP EYLGH+AFG+LL+
Sbjct: 60  SFTDTTSMLST-EVVPKGFLAVCVGKELKRFIIPTEYLGHQAFGVLLR 106


>ref|XP_002316430.1| SAUR family protein [Populus trichocarpa]
           gi|222865470|gb|EEF02601.1| SAUR family protein [Populus
           trichocarpa]
          Length = 185

 Score =  115 bits (287), Expect = 5e-24
 Identities = 62/106 (58%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
 Frame = +3

Query: 42  KKSKISEIVKLQQILKKWRKLANVXXXXXXXXXXXXXXXXXHPCSNKSIKFLKKTLSFSD 221
           K +KIS+IV+LQQILKKWRK AN                  +  ++KSIKFLK+TLSF+D
Sbjct: 6   KSNKISDIVRLQQILKKWRKAANAPKNISSSSNNNSSSSSSN--ASKSIKFLKRTLSFTD 63

Query: 222 --NSVLASTSDIVPKGFLAVCVGKELKKFIIPMEYLGHRAFGILLQ 353
             +S  AS++D VPKG+LAVCVGKELK++IIP EYLGH+AFGILL+
Sbjct: 64  LSSSAAASSNDAVPKGYLAVCVGKELKRYIIPTEYLGHQAFGILLR 109


>gb|AFK41725.1| unknown [Lotus japonicus]
          Length = 177

 Score =  112 bits (280), Expect = 3e-23
 Identities = 67/112 (59%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
 Frame = +3

Query: 33  MDSKKS-KISEIVKLQQILKKWRKLANVXXXXXXXXXXXXXXXXXHPC----SNKSIKFL 197
           MDSKKS KI EIV+LQQILKKW+K+AN                         SNK IKFL
Sbjct: 1   MDSKKSNKIREIVRLQQILKKWKKVANTSKNDSVSAVTTTAATTTVTATSGSSNKGIKFL 60

Query: 198 KKTLSFSDNSVLASTSDIVPKGFLAVCVGKELKKFIIPMEYLGHRAFGILLQ 353
           K+TLSF+D  V +S +DIVPKGFLAVCVGKELKKFIIP  YL H+AF +LLQ
Sbjct: 61  KRTLSFTD--VSSSNNDIVPKGFLAVCVGKELKKFIIPTHYLRHQAFEMLLQ 110


Top