BLASTX nr result

ID: Coptis25_contig00039089 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039089
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002538611.1| conserved hypothetical protein [Ricinus comm...    60   2e-07

>ref|XP_002538611.1| conserved hypothetical protein [Ricinus communis]
           gi|223511360|gb|EEF23772.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +3

Query: 153 MPRKGMRSVFFH----SQXXXXXXXXXXXXXXXXXXXPVYTFSERMISDSLIVAEEMINK 320
           MPRKGMRS+ F+    S                    P  +FSE ++  +L  A  MI K
Sbjct: 1   MPRKGMRSLCFNPKTPSFSVSPRSSPSRGSELSSSTTPRRSFSESVMEQTLETAAAMIMK 60

Query: 321 WNPDTSIYSNVTYLFQENRREAKDFI 398
           WNPDTS Y++VT LF EN+REA  F+
Sbjct: 61  WNPDTSNYASVTSLFYENKREALQFL 86


Top