BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039080
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602483.1| F-box/kelch-repeat protein SKIP6 [Medicago t...    59   3e-07
ref|XP_002868913.1| kelch repeat-containing F-box family protein...    59   4e-07
ref|NP_194666.1| F-box/kelch-repeat protein [Arabidopsis thalian...    58   9e-07
ref|XP_002881069.1| kelch repeat-containing F-box family protein...    56   3e-06

>ref|XP_003602483.1| F-box/kelch-repeat protein SKIP6 [Medicago truncatula]
           gi|355491531|gb|AES72734.1| F-box/kelch-repeat protein
           SKIP6 [Medicago truncatula]
          Length = 356

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
 Frame = -2

Query: 394 GKMYVFGSSV----SSPKPWAEVFDPDLNLWSPLPDPPKKVCESSYGYCCISVVVVGDKI 227
           GK+YV G  V    S    W+EVFDP  N W  +P PP    E    +   S VV G K+
Sbjct: 152 GKIYVIGGCVPDNFSRSANWSEVFDPVNNRWESVPSPP----EIREKWMHASAVVDG-KV 206

Query: 226 YVCMYSVMSVFSFDVKTKVWEQVTTPLSDAFHWSFGGTVLDDILFMYS-LGSVMAYDLTN 50
           Y    +     SFD     WE V   L     W    TV+D IL+ Y  LG +  +D+  
Sbjct: 207 YA--MADRGGVSFDPYNGAWESVGRELD--IGWRGRATVVDGILYCYDYLGKIKGFDVKK 262

Query: 49  EIWFEKPVKGL 17
            +W  K +KGL
Sbjct: 263 GLW--KELKGL 271


>ref|XP_002868913.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314749|gb|EFH45172.1| kelch
           repeat-containing F-box family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 389

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
 Frame = -2

Query: 442 SHTLGE-------RTKPTLVSTHGKMYVFGS--SVSSPKPWAEVFDPDLNLWSPLPDPPK 290
           SHT GE       R  P      GK+YV G     S+P  W EVFDP    W P+  P  
Sbjct: 169 SHTWGEAPSMRVERRYPAANVLDGKIYVTGGCKDCSNPSNWMEVFDPKTQTWEPVSSPGA 228

Query: 289 KVCESSYGYCCI--SVVVVGDKIYVCMYSVMSVFSFDVKTKVWEQVTTPLSDAFHWSFGG 116
           ++     G C +  S VV G+ ++   + ++    +  K   W+++   +   + W +  
Sbjct: 229 EI-----GGCSMHKSAVVEGEILFANSHGLI----YQPKEGRWKRMEWDMDIGWVW-YSY 278

Query: 115 TVLDDILFMYSLGSVMAYDLTNEIWFE-KPVKGL 17
            V++D+L+ Y  G    YD    +W   K VKGL
Sbjct: 279 CVVEDVLYYYYKGDFKWYDTKARLWRNLKGVKGL 312


>ref|NP_194666.1| F-box/kelch-repeat protein [Arabidopsis thaliana]
           gi|75181447|sp|Q9M0E6.1|FBK90_ARATH RecName:
           Full=F-box/kelch-repeat protein At4g29370
           gi|7269835|emb|CAB79695.1| putative protein [Arabidopsis
           thaliana] gi|332660223|gb|AEE85623.1| F-box/kelch-repeat
           protein [Arabidopsis thaliana]
          Length = 378

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = -2

Query: 391 KMYVFGSSVSSPKPWAEVFDPDLNLWSPLPDPP--KKVCESSYGYCCISVVVVGDKIYVC 218
           K+YV G   S    W E+FD     W PLP  P  K + E +       + VVG KIYV 
Sbjct: 173 KIYVMGGCDSGGINWFEMFDVKTQCWRPLPANPDVKVMTEDNVR----KIDVVGGKIYVK 228

Query: 217 MYSVMSVFSFDVKTKVWEQVTTPLSDAFHWSFGGTVLDDILFMYSLGSVMAYDLTNEIWF 38
             +    + +DVK   W      +S    WS    V++++++ YS      YDL   +W 
Sbjct: 229 TGAEFMDWIYDVKRGKWSAADEYMS--LLWSNSWCVIENVMYCYSCSRYRWYDLEARMWR 286

Query: 37  EKPVKGL 17
           E  VKGL
Sbjct: 287 E--VKGL 291


>ref|XP_002881069.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326908|gb|EFH57328.1| kelch
           repeat-containing F-box family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 391

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
 Frame = -2

Query: 394 GKMYVFGSSVSSPKPWAEVFDPDLNLWSPLPDP-PKKVCESSYGYCCISVVVVGDKIYVC 218
           GK+YV G      + W EVFD +   WS +PDP P K      G+  ++ VV+ +KIY+ 
Sbjct: 195 GKIYVIGGCEKRYEDWIEVFDVENGTWSTVPDPSPWKSSLPGGGF--VTSVVMQNKIYI- 251

Query: 217 MYSVMSVFSFDVKTKVWEQVTTPLSDAFHWSFGGTVLDDILFMYSLGSVMAYDLTNEIWF 38
               +    +D     WE          +WS    V++D+L+      V  YD     W 
Sbjct: 252 -LDDLRGLVYDPNDGTWESWEPETKLMSYWSKPCCVIEDLLYSLDPWCVQVYDPNGMFW- 309

Query: 37  EKPVKGL 17
             PV GL
Sbjct: 310 -TPVMGL 315