BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039073
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                201   5e-50
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   178   4e-43
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     175   4e-42
emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]   172   3e-41
emb|CAH67061.1| H0112G12.6 [Oryza sativa Indica Group]                171   4e-41

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  201 bits (511), Expect = 5e-50
 Identities = 99/169 (58%), Positives = 127/169 (75%)
 Frame = +2

Query: 2    PTKPNFVCKLHKSLYGLKQAPRAWYEKFAQALYSLGFVPSHADNSLFIKHHNNNITLILV 181
            P+KP+ VCKL KSLYGLKQAPRAWYE F  A+ SLGF  SH+D SLFIK  + +IT ILV
Sbjct: 1282 PSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKR-DTSITFILV 1340

Query: 182  YVDDILITGSSNSICDFIIEQLKLPFAMKNLGSLHYFLGLEIHRNKDFIFLCQTKYIYDI 361
            YVDDI+ITGSS + C  II QL+  F +K+LG ++YFLG+E+H++   + L Q KY  D+
Sbjct: 1341 YVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQGLLLHQAKYALDL 1400

Query: 362  LKKAKMTDTKPISSPSASTKLDLTTPLLSDPSEYRTLVGSLQYLTWTRP 508
            LKK  M   KP ++P +++KLD +  LLSDP+ YR+ VG+LQYLTWTRP
Sbjct: 1401 LKKTDMLGAKPCATPVSTSKLDHSGTLLSDPTSYRSTVGALQYLTWTRP 1449


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  178 bits (452), Expect = 4e-43
 Identities = 94/172 (54%), Positives = 118/172 (68%), Gaps = 4/172 (2%)
 Frame = +2

Query: 5    TKPNFVCKLHKSLYGLKQAPRAWYEKFAQALYSLGFVPSHADNSLFIKHHNNNITLILVY 184
            T PN+ C L KSLYGLKQ PRAWY + ++ L SLGFVPS AD SLFI + ++    ILVY
Sbjct: 1059 THPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVY 1118

Query: 185  VDDILITGSSNSICDFIIEQLKLPFAMKNLGSLHYFLGLEIHRNKDFIFLCQTKYIYDIL 364
            VDDI+ITGSS    D ++ +LK  FA+K+LG LHYFLG+E+HR  D + LCQ KY  D+L
Sbjct: 1119 VDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLL 1178

Query: 365  KKAKMTDTKPISSPSA-STKLDLTTPLLSDPSE---YRTLVGSLQYLTWTRP 508
            K+  M   KP+ +P A S KL  +   L  P E   YR++VG+LQYLT TRP
Sbjct: 1179 KRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRP 1230


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  175 bits (443), Expect = 4e-42
 Identities = 82/168 (48%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
 Frame = +2

Query: 8    KPNFVCKLHKSLYGLKQAPRAWYEKFAQALYSLGFVPSHADNSLFIKHHNNNITLILVYV 187
            KPN++CKL K+LYGLKQAPRAWY + +  L  LGF PS AD SLF  +  N +  +L+YV
Sbjct: 952  KPNYICKLDKALYGLKQAPRAWYSRLSMKLCDLGFQPSKADTSLFFYNKGNIVIFVLIYV 1011

Query: 188  DDILITGSSNSICDFIIEQLKLPFAMKNLGSLHYFLGLEIHRNKDFIFLCQTKYIYDILK 367
            DDI++  S+    + ++  LK  FA+K+ G LHYFLG+E+++  D I + Q KY  D+LK
Sbjct: 1012 DDIIVASSTEDATNALLRDLKQEFALKDFGDLHYFLGIEVNKLSDGILVTQNKYALDLLK 1071

Query: 368  KAKMTDTKPISSPSAST-KLDLTTPLLSDPSEYRTLVGSLQYLTWTRP 508
            +A M D KP+ +P ++T KL   T  + D + YR++VG+LQYLT TRP
Sbjct: 1072 RAGMLDCKPVDTPLSTTEKLSAYTGSIQDATRYRSIVGALQYLTLTRP 1119


>emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]
          Length = 1556

 Score =  172 bits (435), Expect = 3e-41
 Identities = 89/167 (53%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
 Frame = +2

Query: 11   PNFVCKLHKSLYGLKQAPRAWYEKFAQALYSLGFVPSHADNSLFIKHHNNNITLILVYVD 190
            P  VCKL K+LYGLKQAPRAW+++F+  L   GF  S AD SLFI H N    ++L+YVD
Sbjct: 1141 PTHVCKLQKALYGLKQAPRAWFDRFSAFLLKYGFFCSLADPSLFIFHSNLGSLILLLYVD 1200

Query: 191  DILITGSSNSICDFIIEQLKLPFAMKNLGSLHYFLGLEIHRNKDFIFLCQTKYIYDILKK 370
            DIL+TGSS ++    I+ L   FAMK+LG +HYFLG+EI +  D + L Q+ Y + IL++
Sbjct: 1201 DILLTGSSTALVSTFIQLLSSEFAMKDLGQIHYFLGIEISQTADGLHLSQSHYAFTILER 1260

Query: 371  AKMTDTKPISSP-SASTKLDLTTPLLSDPSEYRTLVGSLQYLTWTRP 508
            A M D KP+S+P  A TK    + LL DPS +R LVG+LQYLT TRP
Sbjct: 1261 ANMVDCKPMSTPLEAKTKTLPNSVLLEDPSYFRGLVGALQYLTLTRP 1307



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = +2

Query: 80  KFAQALYSLGFVPSHADNSLFIKHHNNNITLILVYVDDILITGSSNSICDFIIEQLKLPF 259
           KF   +   GF  S  D SLF K   N+ T +L+YVDDI+IT +  ++   + + L   F
Sbjct: 141 KFYTTIQQDGFHQSRVDYSLFTKIFGNSFTDVLIYVDDIIITDNYENVIAALKKSLHTKF 200

Query: 260 AMKNLGSLHYFLGLEIHRN 316
            +K+L  L YFL +EI R+
Sbjct: 201 RIKDLVQLRYFLSIEIARS 219


>emb|CAH67061.1| H0112G12.6 [Oryza sativa Indica Group]
          Length = 811

 Score =  171 bits (434), Expect = 4e-41
 Identities = 86/169 (50%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
 Frame = +2

Query: 8   KPNFVCKLHKSLYGLKQAPRAWYEKFAQALYSLGFVPSHADNSLFIKHHNNNITLILVYV 187
           KPN VC L+KSLYGLKQAPRAWY +FA  L S+GFV + +D SLFI H  N+   +L+YV
Sbjct: 442 KPNMVCCLNKSLYGLKQAPRAWYSRFATFLQSIGFVEAKSDTSLFILHRGNDTVYLLLYV 501

Query: 188 DDILITGSSNSICDFIIEQLKLPFAMKNLGSLHYFLGLEIHRNKDFIFLCQTKYIYDILK 367
           DDI++T SS ++  + I  L+  F+MK+LG+LH+FLG+ + RN   + L Q +Y  DIL+
Sbjct: 502 DDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQYCIDILE 561

Query: 368 KAKMTDTKPISSPSAST-KLDLTT-PLLSDPSEYRTLVGSLQYLTWTRP 508
           +A M D KP ++P  +T KL  +  P ++DP+++R+L G+LQYLT+TRP
Sbjct: 562 RAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRP 610