BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039040
         (868 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32741.1| hypothetical protein MtrDRAFT_AC150777g16v1 [Medi...   122   8e-26
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 118   2e-24
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 110   4e-22
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         103   2e-21
emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]   103   5e-20

>gb|ABD32741.1| hypothetical protein MtrDRAFT_AC150777g16v1 [Medicago truncatula]
          Length = 187

 Score =  122 bits (307), Expect = 8e-26
 Identities = 54/91 (59%), Positives = 69/91 (75%)
 Frame = +1

Query: 583 KKLKLPTEKHPKPYTLSWLSKTSEVTVSKRCLVNFSSGAKYKDKVWCDMVAMDACHLLLS 762
           +KL+LPT+ HP  Y L WL K +EV VSK CLV+FS G KYKD VWCD+++MDACH+LL 
Sbjct: 3   EKLELPTKDHPHRYKLQWLKKGNEVRVSKCCLVSFSIGQKYKDNVWCDVISMDACHMLLG 62

Query: 763 RPWQFDRGVVHDGRHNTYNFMVELVRIVLMP 855
           RPWQ+DR  ++DG  NTY F+   V+I L+P
Sbjct: 63  RPWQYDRHALYDGHANTYTFVKYGVKIKLVP 93


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  118 bits (296), Expect = 2e-24
 Identities = 54/112 (48%), Positives = 67/112 (59%)
 Frame = +1

Query: 520 KVCRLXXXXXXXXXXXXXXXXKKLKLPTEKHPKPYTLSWLSKTSEVTVSKRCLVNFSSGA 699
           +VC L                +KL LPT+ HP PY L WL+K +EV V K+CLV FS G 
Sbjct: 398 RVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGK 457

Query: 700 KYKDKVWCDMVAMDACHLLLSRPWQFDRGVVHDGRHNTYNFMVELVRIVLMP 855
            Y D+  CD++ MDACHLLL RPW+FDR  VH GR NTY F     +++L P
Sbjct: 458 NYSDEALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTP 509


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  110 bits (275), Expect = 4e-22
 Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = +1

Query: 520 KVCRLXXXXXXXXXXXXXXXXKKLKLPTEKHPKPYTLSWLSKTSEVTVSKRCLVNFSSGA 699
           +VC L                 KL LPT++HP PY L WLSK S V V K+C+++FS G 
Sbjct: 409 RVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGK 468

Query: 700 KYKDKVWCDMVA-MDACHLLLSRPWQFDRGVVHDGRHNTYNFMVELVRIVLMP 855
            YKD+V CD+V  MDACHLLL RPW++DR   H G+ N Y F  +  ++ L P
Sbjct: 469 MYKDEVLCDVVVPMDACHLLLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTP 521


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  103 bits (256), Expect(2) = 2e-21
 Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 11/251 (4%)
 Frame = +1

Query: 136  NKEGGGSVSTTTRPTVSAPNRLTTLQGGGQRFKDTTCFSCGEKGHIASNCKKKSLFVDND 315
            +K    S ++ T+         +++   G R +D  C+ C   GH+  +C  + + V  D
Sbjct: 359  DKPRASSTNSATKSAQKPAGSASSVASTG-RTRDVLCYRCKGYGHVQRDCPNQRVLVVKD 417

Query: 316  E----QTDDLRCTILTILCL--MLVKMISQKRLFTVTRVNYWWFAASVLPRKMRAIMAGY 477
            +       DL    L +L       K   ++++      +Y    + ++ R + A M   
Sbjct: 418  DGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDAEHY---ESLIVQRVLSAQMEKA 474

Query: 478  E-----TIFFTLVALYIGRKVCRLXXXXXXXXXXXXXXXXKKLKLPTEKHPKPYTLSWLS 642
            E     T+F T     I  + CRL                +KL L T+ HP PY + WL+
Sbjct: 475  EQNQRHTLFQTKCV--IKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLN 532

Query: 643  KTSEVTVSKRCLVNFSSGAKYKDKVWCDMVAMDACHLLLSRPWQFDRGVVHDGRHNTYNF 822
             + +V V+K   +NF+ G+ Y+D V CD+V MDAC++LL RPWQFD   +H GR N Y+ 
Sbjct: 533  NSGKVKVTKLVRINFAIGS-YRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSL 591

Query: 823  MVELVRIVLMP 855
            +    +I+L+P
Sbjct: 592  IHHDKKIILLP 602



 Score = 26.2 bits (56), Expect(2) = 2e-21
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 5   EGDEQLVHHYIGGLQQNFKDTLNLFDPWTVPKAHQRALCLENQLT-RRGEAR 157
           EG+E  +  ++GGL +  +D L   D   V +    A   E ++  RR  AR
Sbjct: 267 EGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASAR 318


>emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]
          Length = 818

 Score =  103 bits (257), Expect = 5e-20
 Identities = 57/126 (45%), Positives = 71/126 (56%)
 Frame = +1

Query: 478 ETIFFTLVALYIGRKVCRLXXXXXXXXXXXXXXXXKKLKLPTEKHPKPYTLSWLSKTSEV 657
           E IF T    +I  KVC +                + L LPT KHP+PY L WL+   E 
Sbjct: 413 ENIFHT--RCHINNKVCSMIIDGGSCTNVASTTLVENLNLPTLKHPRPYKLQWLNDFGED 470

Query: 658 TVSKRCLVNFSSGAKYKDKVWCDMVAMDACHLLLSRPWQFDRGVVHDGRHNTYNFMVELV 837
            V+K  LV+FS G +YKD+V CD+V M A H+LL RPWQFDR V HDG  N Y+F+    
Sbjct: 471 KVNKEVLVSFSIG-RYKDEVLCDIVPMHAGHILLGRPWQFDRKVNHDGFKNRYSFIKNNK 529

Query: 838 RIVLMP 855
            I L+P
Sbjct: 530 TITLVP 535