BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038870
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]               35   1e-06
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    35   1e-06
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...    35   4e-06

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 35.0 bits (79), Expect(3) = 1e-06
 Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = +2

Query: 5   NVVTGD----VNEIVLPLEIAQRIIFEE 76
           +V+TGD    VNEI LP EIAQRI FEE
Sbjct: 386 SVITGDAYKRVNEIGLPFEIAQRITFEE 413



 Score = 30.8 bits (68), Expect(3) = 1e-06
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 94  KLFIRHSDGVSMHSIREDLKGHTLL 168
           KL + + DG+S +S+RE  KGHT L
Sbjct: 430 KLCLTYRDGLSTYSLREGSKGHTFL 454



 Score = 30.0 bits (66), Expect(3) = 1e-06
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 GQVVY*RIKDVDVAFIKWPPSTQTFS 245
           GQVV+ RI D D+ FI  PP+T   S
Sbjct: 457 GQVVHRRIMDGDIVFINRPPTTHKHS 482


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 35.0 bits (79), Expect(3) = 1e-06
 Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = +2

Query: 5   NVVTGD----VNEIVLPLEIAQRIIFEE 76
           +V+TGD    VNEI LP EIAQRI FEE
Sbjct: 326 SVITGDAYKRVNEIGLPFEIAQRITFEE 353



 Score = 30.8 bits (68), Expect(3) = 1e-06
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 94  KLFIRHSDGVSMHSIREDLKGHTLL 168
           KL + + DG+S +S+RE  KGHT L
Sbjct: 370 KLCLTYRDGLSTYSLREGSKGHTFL 394



 Score = 30.0 bits (66), Expect(3) = 1e-06
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 GQVVY*RIKDVDVAFIKWPPSTQTFS 245
           GQVV+ RI D D+ FI  PP+T   S
Sbjct: 397 GQVVHRRIMDGDIVFINRPPTTHKHS 422


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2020

 Score = 35.4 bits (80), Expect(3) = 4e-06
 Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 4/28 (14%)
 Frame = +2

Query: 5   NVVTGD----VNEIVLPLEIAQRIIFEE 76
           NV+TGD    +NE+ +P+E+AQRI FEE
Sbjct: 330 NVITGDCYKRINEVGIPVEVAQRITFEE 357



 Score = 32.7 bits (73), Expect(3) = 4e-06
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 GQVVY*RIKDVDVAFIKWPPSTQTFSSTLVYV 263
           GQ+V+ RI D D+ FI  PP+T   S   +YV
Sbjct: 401 GQIVHRRIMDGDIVFINRPPTTHKHSLQALYV 432



 Score = 26.2 bits (56), Expect(3) = 4e-06
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 97  LFIRHSDGVSMHSIREDLKGHTLL 168
           L + + +GVS +S+RE  KGH  L
Sbjct: 375 LCLTYKEGVSTYSLREGSKGHIYL 398