BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038847
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]   121   7e-26
gb|AAF79892.1|AC022472_1 Contains similarity to an unknown prote...   107   8e-22
ref|NP_173449.1| pentatricopeptide repeat-containing protein [Ar...   107   8e-22
ref|XP_002890375.1| pentatricopeptide repeat-containing protein ...   105   4e-21

>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/96 (59%), Positives = 78/96 (81%), Gaps = 2/96 (2%)
 Frame = -3

Query: 285 MLSHGLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGE 106
           ML+ GL+PD+ + PSA+KACAGL  ++  R++HG+A V+GF  DSFV SSLVHMYIKC +
Sbjct: 105 MLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ 164

Query: 105 MSEARKLFDRMCDRNVVSWSAMVA--ARKGCVDKAK 4
           + +A ++FDRM + +VVSWSA+VA  AR+GCVD+AK
Sbjct: 165 IRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/80 (33%), Positives = 44/80 (55%)
 Frame = -3

Query: 273 GLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGEMSEA 94
           G+ P+S   P  L AC  +  +  G+  H  +   G   D +V S+L+ MY KCG +  +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 93  RKLFDRMCDRNVVSWSAMVA 34
           R  FD +  +N+V W+A++A
Sbjct: 441 RICFDGIPTKNLVCWNAVIA 460


>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/96 (59%), Positives = 78/96 (81%), Gaps = 2/96 (2%)
 Frame = -3

Query: 285 MLSHGLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGE 106
           ML+ GL+PD+ + PSA+KACAGL  ++  R++HG+A V+GF  DSFV SSLVHMYIKC +
Sbjct: 105 MLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ 164

Query: 105 MSEARKLFDRMCDRNVVSWSAMVA--ARKGCVDKAK 4
           + +A ++FDRM + +VVSWSA+VA  AR+GCVD+AK
Sbjct: 165 IRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/80 (33%), Positives = 44/80 (55%)
 Frame = -3

Query: 273 GLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGEMSEA 94
           G+ P+S   P  L AC  +  +  G+  H  +   G   D +V S+L+ MY KCG +  +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 93  RKLFDRMCDRNVVSWSAMVA 34
           R  FD +  +N+V W+A++A
Sbjct: 441 RICFDGIPTKNLVCWNAVIA 460


>gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  107 bits (268), Expect = 8e-22
 Identities = 46/94 (48%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
 Frame = -3

Query: 285 MLSHGLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGE 106
           M SHGL+PDS++ P+  K CA L   ++G++IH ++CV+G   D+FV  S+ HMY++CG 
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGR 166

Query: 105 MSEARKLFDRMCDRNVVSWSAMVA--ARKGCVDK 10
           M +ARK+FDRM D++VV+ SA++   ARKGC+++
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEE 200


>ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g20230 gi|332191832|gb|AEE29953.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  107 bits (268), Expect = 8e-22
 Identities = 46/94 (48%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
 Frame = -3

Query: 285 MLSHGLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGE 106
           M SHGL+PDS++ P+  K CA L   ++G++IH ++CV+G   D+FV  S+ HMY++CG 
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGR 166

Query: 105 MSEARKLFDRMCDRNVVSWSAMVA--ARKGCVDK 10
           M +ARK+FDRM D++VV+ SA++   ARKGC+++
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEE 200


>ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336217|gb|EFH66634.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 760

 Score =  105 bits (262), Expect = 4e-21
 Identities = 46/94 (48%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = -3

Query: 285 MLSHGLLPDSYIFPSALKACAGLLDVRIGREIHGLACVTGFGFDSFVHSSLVHMYIKCGE 106
           M SHGL+PD+++ P+  K CA L   + G++IH +ACV+G   D+FV  SL HMY++CG 
Sbjct: 107 MFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGR 166

Query: 105 MSEARKLFDRMCDRNVVSWSAMVA--ARKGCVDK 10
           M +ARK+FDRM +++VV+ SA++   ARKGC+++
Sbjct: 167 MGDARKVFDRMSEKDVVTCSALLCGYARKGCLEE 200