BLASTX nr result
ID: Coptis25_contig00038844
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00038844
(760 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi... 354 1e-95
emb|CBI18974.3| unnamed protein product [Vitis vinifera] 354 1e-95
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,... 344 1e-92
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi... 338 6e-91
ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2... 333 2e-89
>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 354 bits (908), Expect = 1e-95
Identities = 172/213 (80%), Positives = 191/213 (89%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
PTSFIYSVL+HTYGI+NRIEDA+ FL+ME+N I ADV VYNALIGAFCKV++ KN YRV
Sbjct: 248 PTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRV 307
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCEI 361
L+EMD KGI NSRTCN+ILNSLIS GDTDEAF VFRRMIK+C+PD DTYTMMIKMFCE
Sbjct: 308 LNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIKMFCEN 367
Query: 362 DKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTF 541
DKLEMALKVWKYM LK+FVPSMHTFSVLINGLC KG +KAC+L+EEM+EKGI+PS TF
Sbjct: 368 DKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTF 427
Query: 542 GRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 640
G+L+QLLIKE REDVLEFL EKMNLLVKEPLCD
Sbjct: 428 GKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 460
Score = 73.9 bits (180), Expect = 3e-11
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
P S YS+L+ +G + A + F EM G D+V Y ++ CK R +
Sbjct: 178 PDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGI 237
Query: 182 LDEMDKKGIPSNSRTCNVILNSL-ISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCE 358
+ EMD S +V++++ I D +T E DV Y +I FC+
Sbjct: 238 VKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCK 297
Query: 359 IDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGST 538
++KL+ A +V M K P+ T ++++N L + G+ +A + M+ K P T
Sbjct: 298 VNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI-KVCDPDADT 356
Query: 539 F 541
+
Sbjct: 357 Y 357
Score = 70.5 bits (171), Expect = 4e-10
Identities = 39/179 (21%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
Frame = +2
Query: 17 YSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRVLDEMD 196
+ +++ Y ++++A+ F MEK + ++ +N+L+ A CK + + M
Sbjct: 114 FCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMK 173
Query: 197 KKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLE 373
+ IP +S+T +++L + +A +FR M+ + C+PD+ TY +M+ + C+ +++
Sbjct: 174 DQFIP-DSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVD 232
Query: 374 MALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRL 550
A+ + K M P+ +SVL++ + + A +M I+ + + L
Sbjct: 233 EAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNAL 291
>emb|CBI18974.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 354 bits (908), Expect = 1e-95
Identities = 172/213 (80%), Positives = 191/213 (89%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
PTSFIYSVL+HTYGI+NRIEDA+ FL+ME+N I ADV VYNALIGAFCKV++ KN YRV
Sbjct: 96 PTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRV 155
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCEI 361
L+EMD KGI NSRTCN+ILNSLIS GDTDEAF VFRRMIK+C+PD DTYTMMIKMFCE
Sbjct: 156 LNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIKMFCEN 215
Query: 362 DKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTF 541
DKLEMALKVWKYM LK+FVPSMHTFSVLINGLC KG +KAC+L+EEM+EKGI+PS TF
Sbjct: 216 DKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTF 275
Query: 542 GRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 640
G+L+QLLIKE REDVLEFL EKMNLLVKEPLCD
Sbjct: 276 GKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 308
>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 439
Score = 344 bits (882), Expect = 1e-92
Identities = 165/213 (77%), Positives = 191/213 (89%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
PTSFIYSVLIHTYGI+NRIEDA+D FL MEKNG+ ADV YNALIGAFCKV++FKNVYRV
Sbjct: 227 PTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRV 286
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCEI 361
L+EMD KG+ NSRT N+ILN+LI+RG+TDEAF VFRRMIK+CEPD DTYTMMIKMFCE
Sbjct: 287 LNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIKVCEPDADTYTMMIKMFCER 346
Query: 362 DKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTF 541
++LEMALKVWKYM K FVPSMHTFSVLINGLC +G+V+ ACV++E+M+EKGI+PSG TF
Sbjct: 347 NELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTF 406
Query: 542 GRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 640
GRLR LLIKE REDVLEFL +K+N+L+KEPL D
Sbjct: 407 GRLRHLLIKEGREDVLEFLQQKINVLIKEPLWD 439
Score = 75.9 bits (185), Expect = 9e-12
Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 1/179 (0%)
Frame = +2
Query: 17 YSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRVLDEMD 196
+ +++ Y ++E+A+ F MEK + ++ +N L A CK + + D
Sbjct: 93 FCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSK 152
Query: 197 KKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLE 373
+ +P +S+T ++L + +A +FR M+ + C PD+ TY +M+ + C+ +++
Sbjct: 153 DRFVP-DSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVD 211
Query: 374 MALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRL 550
AL + K M L P+ +SVLI+ + + A M + G++ + + L
Sbjct: 212 EALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNAL 270
Score = 75.1 bits (183), Expect = 2e-11
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
P S Y++L+ +G + A + F EM G D+V Y ++ CK R +
Sbjct: 157 PDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDI 216
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCE 358
+ EMD S +V++++ ++A F M K + DV Y +I FC+
Sbjct: 217 VKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCK 276
Query: 359 IDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGST 538
++K + +V M K P+ T ++++N L A+GE +A + M+ K +P T
Sbjct: 277 VNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMI-KVCEPDADT 335
Query: 539 F 541
+
Sbjct: 336 Y 336
>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 338 bits (868), Expect = 6e-91
Identities = 158/213 (74%), Positives = 188/213 (88%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
P+SFIYSVL+HTYG++NRIEDA+ FLEME+NG++ADV YNALI AFCK ++ KNVYRV
Sbjct: 227 PSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRV 286
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCEI 361
L +MD KG+ NSRTCN+I+NSLI RG+TDEAF +FRRMIK+CEPDVD+YTM+IKMFC
Sbjct: 287 LKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGR 346
Query: 362 DKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTF 541
+L+MALK+WKYM K+FVPSMHTFSVLINGLC G T+ACVL+EEM+EKGI+PSG+TF
Sbjct: 347 KELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATF 406
Query: 542 GRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 640
GRLR LLIKE R+DVL+FL EKMNLLVKEPLCD
Sbjct: 407 GRLRHLLIKEGRKDVLKFLQEKMNLLVKEPLCD 439
Score = 80.5 bits (197), Expect = 4e-13
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
P S YS+LI +G + A + + EM +G + D V Y+ ++ CK R +
Sbjct: 157 PDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEI 216
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCE 358
+ EMD +S +V++++ ++A + F M + DV Y +I FC+
Sbjct: 217 VKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCK 276
Query: 359 IDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGST 538
+K++ +V K M LK P+ T +++IN L +GE +A + M+ K +P +
Sbjct: 277 ANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMI-KVCEPDVDS 335
Query: 539 FGRLRQLLIKEKREDV 586
+ + ++ K D+
Sbjct: 336 YTMIIKMFCGRKELDM 351
Score = 78.6 bits (192), Expect = 1e-12
Identities = 45/201 (22%), Positives = 96/201 (47%), Gaps = 1/201 (0%)
Frame = +2
Query: 17 YSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRVLDEMD 196
+ +++ Y ++E+A+ F MEK + +V +N L+ A CK + + D M
Sbjct: 93 FCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMK 152
Query: 197 KKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLE 373
+ +P +S+T ++++ + +A ++R MI C PD TY++M+ + C+ +++
Sbjct: 153 DQFVP-DSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVD 211
Query: 374 MALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRLR 553
A+++ K M PS +SVL++ + + A EM G+ + + L
Sbjct: 212 EAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALI 271
Query: 554 QLLIKEKREDVLEFLIEKMNL 616
K + + +++ M+L
Sbjct: 272 SAFCKANKMKNVYRVLKDMDL 292
>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
predicted protein [Populus trichocarpa]
Length = 440
Score = 333 bits (855), Expect = 2e-89
Identities = 161/211 (76%), Positives = 185/211 (87%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
PT FIYSVL+HTYGI+NRIEDA+ FLEME NGI DV VYNALIGAFCK +R KNVYRV
Sbjct: 227 PTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRV 286
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTMMIKMFCEI 361
L+EMD KG+ NSRT N+IL+SLI RG+TDEA+ VF RMIK+CEPD DTYTMMIKMFCE
Sbjct: 287 LNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTMMIKMFCER 346
Query: 362 DKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTF 541
D+L+ ALKVWKYM LKRF+PSMHTF VLINGLC KG+VT+ACVL+EEM+EKGI+PSG TF
Sbjct: 347 DELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTF 406
Query: 542 GRLRQLLIKEKREDVLEFLIEKMNLLVKEPL 634
GRLRQLLIKE REDVL+FL +K+N+LV +PL
Sbjct: 407 GRLRQLLIKEGREDVLKFLQKKINVLVNDPL 437
Score = 83.6 bits (205), Expect = 4e-14
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 1/181 (0%)
Frame = +2
Query: 2 PTSFIYSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRV 181
P S YS+L+ +G D + A + F EM NG D+V Y ++ CK R +
Sbjct: 157 PDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGI 216
Query: 182 LDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCE 358
++EMD +V++++ ++A + F M EPDV Y +I FC+
Sbjct: 217 VNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCK 276
Query: 359 IDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGST 538
++L+ +V M K P+ TF+++++ L +GE +A + M+ K +P T
Sbjct: 277 ANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMI-KVCEPDADT 335
Query: 539 F 541
+
Sbjct: 336 Y 336
Score = 76.3 bits (186), Expect = 7e-12
Identities = 43/188 (22%), Positives = 89/188 (47%), Gaps = 1/188 (0%)
Frame = +2
Query: 17 YSVLIHTYGIDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVSRFKNVYRVLDEMD 196
+ +++ Y ++E+A+ F M+K + ++ +N L+ A CK + + D +
Sbjct: 93 FCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIK 152
Query: 197 KKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLE 373
+ +P +S+T +++L + +A +FR M+ C PD+ TY +M+ + C+ +++
Sbjct: 153 DRFVP-DSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVD 211
Query: 374 MALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRLR 553
AL + M P+ +SVL++ + + A EM GI+P + + L
Sbjct: 212 EALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALI 271
Query: 554 QLLIKEKR 577
K R
Sbjct: 272 GAFCKANR 279