BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038808
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20053.3| unnamed protein product [Vitis vinifera]               83   4e-14
ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containi...    83   4e-14
ref|XP_002519129.1| pentatricopeptide repeat-containing protein,...    77   3e-12
ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containi...    75   8e-12
ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11

>emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 SPTLIKNTLFEYRNKPIELLKLIDNLGTAHFDLNCFCLAVSILSSLNSPQHAVQLMKKGI 386
           +P LI N L+   +KP  +   I +L     D   +CLAV +L+ L SP+ A+QL+K+ +
Sbjct: 72  TPALISNVLYNLCSKPQLVSDFIHHLHPHCLDTKSYCLAVVLLARLPSPKLALQLLKQ-V 130

Query: 387 EKGYVKSNNEVFKEFESLE--MSNTTTLVYDILISTYCKLKKAEEGLECFYFMMDRNVVP 560
               + +N E+F E       +S  +++V+D+L+   C+L++A+E  +CFY M ++ +VP
Sbjct: 131 MGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVP 190

Query: 561 KIET 572
           KIET
Sbjct: 191 KIET 194


>ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 SPTLIKNTLFEYRNKPIELLKLIDNLGTAHFDLNCFCLAVSILSSLNSPQHAVQLMKKGI 386
           +P LI N L+   +KP  +   I +L     D   +CLAV +L+ L SP+ A+QL+K+ +
Sbjct: 94  TPALISNVLYNLCSKPQLVSDFIHHLHPHCLDTKSYCLAVVLLARLPSPKLALQLLKQ-V 152

Query: 387 EKGYVKSNNEVFKEFESLE--MSNTTTLVYDILISTYCKLKKAEEGLECFYFMMDRNVVP 560
               + +N E+F E       +S  +++V+D+L+   C+L++A+E  +CFY M ++ +VP
Sbjct: 153 MGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVP 212

Query: 561 KIET 572
           KIET
Sbjct: 213 KIET 216


>ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541792|gb|EEF43340.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 643

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 SPTLIKNTLFEYRNKPIELLKLIDNLGTAHFDLNCFCLAVSILSSLNSPQHAVQLMKKGI 386
           SP+LI  TL     K    L+ + ++G    D+   CLAV+++S   SP+  + L+K+ I
Sbjct: 81  SPSLISATLLSLHKKSDLALQFVTHIGFKGLDIKTKCLAVAVVSRSPSPKSTLHLLKQTI 140

Query: 387 EKGYVKSNNEVFKEFESLE--MSNTTTLVYDILISTYCKLKKAEEGLECFYFMMDRNVVP 560
           E   V    +VF E       +   +++V+D+LI   C+LK+ ++  ECF  M ++ VVP
Sbjct: 141 ESR-VAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVP 199

Query: 561 KIET 572
           KIET
Sbjct: 200 KIET 203


>ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 75.1 bits (183), Expect = 8e-12
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 SPTLIKNTLFEYRNKPIELLKLIDNLGTAHFDLNCFCLAVSILSSLNSPQHAVQLMKKGI 386
           +P+LI  TL      P  +L  +++      D    CLA+ I++ L SP+ A+ L+K+ +
Sbjct: 65  TPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLKQAL 124

Query: 387 EKGYVKSNNEVFKEFESLE--MSNTTTLVYDILISTYCKLKKAEEGLECFYFMMDRNVVP 560
             G   S  E+F+   +    +   +++V+D LI + C + +A+E  ECFY M ++ V+P
Sbjct: 125 GGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 561 KIET 572
            IET
Sbjct: 185 TIET 188


>ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 SPTLIKNTLFEYRNKPIELLKLIDNLGTAHFDLNCFCLAVSILSSLNSPQHAVQLMKKGI 386
           +P+LI  TL      P  +L  +++      D    CLA+ I++ L SP+ A+ L+++ +
Sbjct: 65  TPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLRQAL 124

Query: 387 EKGYVKSNNEVFKEFESLE--MSNTTTLVYDILISTYCKLKKAEEGLECFYFMMDRNVVP 560
             G   S  E+F+   +    +   +++V+D LI + C + +A+E  ECFY M ++ V+P
Sbjct: 125 GGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 561 KIET 572
            IET
Sbjct: 185 TIET 188