BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038793
         (801 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat...   258   8e-67
emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]   258   8e-67
ref|XP_002511392.1| pentatricopeptide repeat-containing protein,...   229   4e-58
ref|NP_171850.1| pentatricopeptide repeat-containing protein [Ar...   219   5e-55
ref|XP_002892165.1| pentatricopeptide repeat-containing protein ...   214   1e-53

>ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera] gi|298205226|emb|CBI17285.3|
           unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  258 bits (660), Expect = 8e-67
 Identities = 133/222 (59%), Positives = 160/222 (72%)
 Frame = -3

Query: 667 LNLVSYTKLLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGIS 488
           L L+SYTKLLA+HVN  RH  AL LF  MHA+ +  LD+FVFPLALKSC++ HRP LG +
Sbjct: 9   LRLLSYTKLLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAA 68

Query: 487 IHAHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERNVGVWNAMISLYAGCK 308
           IHAH+ K S VS NPF++CALVDMYGKCVS++  R LFDE+  RN+ VWNAMIS+Y    
Sbjct: 69  IHAHVTKFSLVS-NPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSG 127

Query: 307 NVGSAIQLFEVMDVEPNASTFNSIMSGLSELDGGCTKALAFYRRMREFGVKPSCXXXXXX 128
            V  A+ LFEVMDVEPNASTFN+I+SGLS L+ G  KAL+FYRRM E G+K +       
Sbjct: 128 RVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALSFYRRMGEVGLKQNLITLLAL 187

Query: 127 XXXXXXXGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRC 2
                   AL  +KEIHG++IRNGID H  L S L+E YGRC
Sbjct: 188 LPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRC 229


>emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  258 bits (660), Expect = 8e-67
 Identities = 133/222 (59%), Positives = 160/222 (72%)
 Frame = -3

Query: 667 LNLVSYTKLLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGIS 488
           L L+SYTKLLA+HVN  RH  AL LF  MHA+ +  LD+FVFPLALKSC++ HRP LG +
Sbjct: 9   LRLLSYTKLLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAA 68

Query: 487 IHAHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERNVGVWNAMISLYAGCK 308
           IHAH+ K S VS NPF++CALVDMYGKCVS++  R LFDE+  RN+ VWNAMIS+Y    
Sbjct: 69  IHAHVTKFSLVS-NPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSG 127

Query: 307 NVGSAIQLFEVMDVEPNASTFNSIMSGLSELDGGCTKALAFYRRMREFGVKPSCXXXXXX 128
            V  A+ LFEVMDVEPNASTFN+I+SGLS L+ G  KAL+FYRRM E G+K +       
Sbjct: 128 RVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALSFYRRMGEVGLKQNLITLLAL 187

Query: 127 XXXXXXXGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRC 2
                   AL  +KEIHG++IRNGID H  L S L+E YGRC
Sbjct: 188 LPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRC 229


>ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550507|gb|EEF51994.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  229 bits (585), Expect = 4e-58
 Identities = 115/222 (51%), Positives = 150/222 (67%)
 Frame = -3

Query: 667 LNLVSYTKLLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGIS 488
           L L+S+TK L +HVN   H  AL LF  M  + +L LD +VFPL LKSCS++  P LG S
Sbjct: 25  LRLLSFTKQLTSHVNRGLHHDALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTS 84

Query: 487 IHAHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERNVGVWNAMISLYAGCK 308
           +HAHI+K   +S NPF++ ALVDMYGKC  +   RKLFDE+ +RNV VWNAMISLY    
Sbjct: 85  VHAHIVKMGFLS-NPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSN 143

Query: 307 NVGSAIQLFEVMDVEPNASTFNSIMSGLSELDGGCTKALAFYRRMREFGVKPSCXXXXXX 128
            V  A+ +F+ M++EPN STFN+++ GLS +  G  KA+AFY +MR+ G+KP+       
Sbjct: 144 RVRDALDMFDAMEIEPNVSTFNALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLAL 203

Query: 127 XXXXXXXGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRC 2
                   ALN ++EIHG+SIRN ID H QL SGL++ YGRC
Sbjct: 204 LPACVGIAALNLIREIHGYSIRNDIDRHPQLGSGLLDAYGRC 245


>ref|NP_171850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180302|sp|Q9LR72.1|PPR7_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g03510 gi|9280666|gb|AAF86535.1|AC002560_28
           F21B7.13 [Arabidopsis thaliana]
           gi|332189459|gb|AEE27580.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 429

 Score =  219 bits (558), Expect = 5e-55
 Identities = 111/220 (50%), Positives = 150/220 (68%)
 Frame = -3

Query: 661 LVSYTKLLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIH 482
           L+S TK L+++ N   HE+AL LF +MH++ +L LD+ VF LALKSC++  RP LG S+H
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 481 AHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERNVGVWNAMISLYAGCKNV 302
           AH +KS+ +S NPF+ CAL+DMYGKC+S++  RKLFDE+ +RN  VWNAMIS Y  C  V
Sbjct: 72  AHSVKSNFLS-NPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKV 130

Query: 301 GSAIQLFEVMDVEPNASTFNSIMSGLSELDGGCTKALAFYRRMREFGVKPSCXXXXXXXX 122
             A++L+E MDV PN S+FN+I+ GL   + G  +A+ FYR+M EF  KP+         
Sbjct: 131 KEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVS 190

Query: 121 XXXXXGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRC 2
                GA   +KEIH ++ RN I+ H QL SGL+E YGRC
Sbjct: 191 ACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRC 230



 Score = 59.3 bits (142), Expect = 9e-07
 Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
 Frame = -3

Query: 532 LKSCSSLHRPFLGISIHAHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERN 353
           + +CS++    L   IH++  ++  +  +P +   LV+ YG+C S+   + +FD M +R+
Sbjct: 189 VSACSAIGAFRLIKEIHSYAFRNL-IEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRD 247

Query: 352 VGVWNAMISLYAGCKNVGSAIQLFEVMD---VEPNASTFNSIMSGLSELDGGCTKALAFY 182
           V  W+++IS YA   +  SA++ F+ M+   V P+   F +++   S   G   +AL ++
Sbjct: 248 VVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHA-GLADEALVYF 306

Query: 181 RRMR-EFGVKPS 149
           +RM+ ++G++ S
Sbjct: 307 KRMQGDYGLRAS 318


>ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338007|gb|EFH68424.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 429

 Score =  214 bits (546), Expect = 1e-53
 Identities = 108/220 (49%), Positives = 147/220 (66%)
 Frame = -3

Query: 661 LVSYTKLLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIH 482
           L+S TK L+++ N   HE+AL LF +MH++ +L LD+ VF LALKSC++   P LG S+H
Sbjct: 12  LISLTKQLSSYANQGFHEQALTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVH 71

Query: 481 AHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERNVGVWNAMISLYAGCKNV 302
           AH +KS+ +S NPF+ CAL+DMYGKC+S+   RKLFDE+ +RN  VWNAMIS Y  C  +
Sbjct: 72  AHSVKSNFLS-NPFVGCALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKI 130

Query: 301 GSAIQLFEVMDVEPNASTFNSIMSGLSELDGGCTKALAFYRRMREFGVKPSCXXXXXXXX 122
             A++L+E MDV PN S+FN+I+ G    + G  KA+ FYR+M +F  KP+         
Sbjct: 131 QEAVELYEAMDVMPNESSFNAIIKGFVGTEDGSYKAIEFYRKMIDFRFKPNLITLLALVS 190

Query: 121 XXXXXGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRC 2
                GA   +KEIH ++ RN I+ H QL SGL+E YGRC
Sbjct: 191 ACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRC 230



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 36/132 (27%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
 Frame = -3

Query: 532 LKSCSSLHRPFLGISIHAHIIKSSPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMTERN 353
           + +CS++    L   IH++  ++  +  +P +   LV+ YG+C  +   + +F+ MT+R+
Sbjct: 189 VSACSAIGAFRLIKEIHSYAFRNL-IEPHPQLKSGLVEAYGRCGCIVYVQLVFESMTDRD 247

Query: 352 VGVWNAMISLYAGCKNVGSAIQLFEVMD---VEPNASTFNSIMSGLSELDGGCTKALAFY 182
           V  W+++IS YA   +  SA++ F+ M+   V P+   F +++   S   G   +AL ++
Sbjct: 248 VVAWSSLISAYALHGDAESALRTFQEMESAKVTPDDIAFLNVLKACSHA-GLADEALLYF 306

Query: 181 RRMR-EFGVKPS 149
           +RM+ ++G++ S
Sbjct: 307 KRMQGDYGLRAS 318