BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038780
         (1117 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    79   2e-12
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    79   3e-12
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    78   3e-12
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    78   5e-12
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    73   1e-10

>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
 Frame = +2

Query: 137  WNSIVQDLPQSSLKEKILSTEINVHLPEDRIIWSPNPAGTYTSKSAYVALRIPRDTVRCY 316
            W+ I++ +P +S  +            +D IIW  +P   ++ K A+  LR  R  V  +
Sbjct: 826  WHPIIEAIPSNSNPKMG---------QKDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWH 876

Query: 317  NMVWGKLVIPKHSFTAWLLFSGNLPTQDRLVQKKVLHSSKC--CLRNPNSRENSKHLFFE 490
            ++VW K  +P+HSF  W++    L TQD+L +  +   ++C  CLRN    E+  HLFFE
Sbjct: 877  DIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRN---NEDHNHLFFE 933

Query: 491  CPFSKALTNIVKQHLGLPAQASNGNREWNQLMRLCQKNTIEIEV-YKVYVCAVVSYIGRE 667
            C ++KA+   V     +P + + G  EW +   +       I    K+   A V ++ +E
Sbjct: 934  CSYTKAIWWDVCDRCDIP-RMTKGWDEWIRWATVSWHGKSFINFSRKLSFAATVYHVWQE 992

Query: 668  RNYMRFRKATQGWMTVRNRLLGDVGVYLQGQLTVVKDSI 784
            RN   F     G     N +   +   ++ +L ++++ +
Sbjct: 993  RNARIF----AGLSRTSNLVFNQIECIIRDKLDLMRNVV 1027


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
 Frame = +2

Query: 137  WNSIVQDLPQSSLKEKILSTEINVHLPEDRIIWSPNPAGTYTSKSAYVALRIPRDTVRCY 316
            W+ I++ +P +S  +            +D I+W  +P   +  K A+  LR  R  V  +
Sbjct: 1166 WHPIIEAIPSNSNPKMG---------QKDEIVWLDSPNHRFLVKVAWEHLRRHRQMVEWH 1216

Query: 317  NMVWGKLVIPKHSFTAWLLFSGNLPTQDRLVQKKVLHSSKC--CLRNPNSRENSKHLFFE 490
            ++VW K  +P+HSF  W+     L TQD+L +  +   ++C  CLRN    E+  HLFFE
Sbjct: 1217 DIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRN---NEDHNHLFFE 1273

Query: 491  CPFSKALTNIVKQHLGLPAQASNGNREWNQLMRLCQKNTIEIEV-YKVYVCAVVSYIGRE 667
            C ++KA+   V     +P + + G  EW +   +       +    K+   A V ++ +E
Sbjct: 1274 CSYTKAIWWDVCDRCDIP-RMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQE 1332

Query: 668  RNYMRFRKATQGWMTVRNRLLGDVGVYLQGQLTVVKDSI 784
            RN   F     G     N +L  +   ++ +L ++++ +
Sbjct: 1333 RNARIF----AGMSRTPNLVLNQIECIIRDKLDLMRNVV 1367


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
 Frame = +2

Query: 137 WNSIVQDLPQSSLKEKILSTEINVHLPEDRIIWSPNPAGTYTSKSAYVALRIPRDTVRCY 316
           W+ I++ +P +S  +            +D ++W  +P   ++ K A+  LR  R  V  +
Sbjct: 293 WHPIIEAIPSNSNPKMG---------QKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWH 343

Query: 317 NMVWGKLVIPKHSFTAWLLFSGNLPTQDRLVQKKVLHSSKC--CLRNPNSRENSKHLFFE 490
           ++VW K  +P+HSF  W+     L TQD+L +  +   ++C  CLRN    E+  HLFFE
Sbjct: 344 DIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRN---NEDHNHLFFE 400

Query: 491 CPFSKALTNIVKQHLGLPAQASNGNREWNQLMRLCQKNTIEIEV-YKVYVCAVVSYIGRE 667
           C ++KA+   V     +P + + G  EW +   +       +    K+   A V ++ +E
Sbjct: 401 CSYTKAIWWDVCDRCDIP-RMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQE 459

Query: 668 RNYMRFRKATQGWMTVRNRLLGDVGVYLQGQLTVVKDSI 784
           RN   F     G     N +L  +   ++ +L ++++ +
Sbjct: 460 RNARIF----AGMSRTPNLVLNQIECIIRDKLDLMRNVV 494


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 77.8 bits (190), Expect = 5e-12
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
 Frame = +2

Query: 137 WNSIVQDLPQSSLKEKILSTEINVHLPEDRIIWSPNPAGTYTSKSAYVALRIPRDTVRCY 316
           W+ I++ +P +S  +            +D I+W  +P   ++ K A+  LR  R  V  +
Sbjct: 111 WHPIIEAIPSNSNPKMG---------QKDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWH 161

Query: 317 NMVWGKLVIPKHSFTAWLLFSGNLPTQDRLVQKKVLHSSKC--CLRNPNSRENSKHLFFE 490
           ++VW K  +P+HSF  W++    L TQD+L +  +   ++C  CLRN    E+  HLFFE
Sbjct: 162 DIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRN---NEDHNHLFFE 218

Query: 491 CPFSKALTNIVKQHLGLPAQASNGNREWNQLMRLCQKNTIEIEV-YKVYVCAVVSYIGRE 667
           C ++KA+   V     +P + + G  EW +   +       +    K+   A V ++ +E
Sbjct: 219 CSYTKAIWWDVCDRCDIP-RMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQE 277

Query: 668 RNYMRFRKATQGWMTVRNRLLGDVGVYLQGQLTVVKDSI 784
           RN   F     G     N +   +   ++ +L ++++ +
Sbjct: 278 RNARIF----AGLSRTSNLVFNQIECIIRDKLDLMRNVV 312


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 7/283 (2%)
 Frame = +2

Query: 113 KLVNSLQKWNSIVQDL---PQSSLKEKILSTEINVHLPEDRIIWSPNPAGTYTSKSAYVA 283
           K+ N L     I+ D      ++L EKI    + +    D++IW+ +  G  ++K A+  
Sbjct: 2   KVANYLVNGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSF 61

Query: 284 LRIPRDTVRCYNMVWGKLVIPKHSFTAWLLFSGNLPTQDRLVQKKVLHSSKCCLRNPNSR 463
           L     TV    M+W     P  +F  W      LPT D L ++     S CC       
Sbjct: 62  LPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQA 121

Query: 464 ENSKHLFFECPFSKALTNIVKQHLGLPAQASNGNREWNQLMRLCQKNTIEIEVYKVYVCA 643
           E S H+F +CP +  L + +        +A++ + +++ ++ +   + +   V    +  
Sbjct: 122 ETSSHIFLQCPVTLQLWDWL-------LKATDQHLDFSSILNI---SRMVQHVMNSAIVH 171

Query: 644 VVSYIGRERNYMRFRKATQGWMTVRNRLLGDVGVYLQGQLTVVKDSIHLKALMERLRITV 823
           ++  I  E N   F    +   T+ N +L +V + L   L +VK +  ++        ++
Sbjct: 172 IMWSIWLECNNKYFDGVQKPMSTLFNTILAEV-LRLSFMLDIVKGASSMQDFKLARLFSI 230

Query: 824 EYKTKVPVPC---IWRKPEPDTAMPNADGSLTDN-RCGNGGIL 940
            +KT    PC   IW  P       N DGS+  +  CG+ G++
Sbjct: 231 PFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVI 273