BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038692
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513116.1| pentatricopeptide repeat-containing protein,...   118   6e-25
ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
emb|CBI17752.3| unnamed protein product [Vitis vinifera]              114   1e-23
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2...   110   1e-22

>ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548127|gb|EEF49619.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1128

 Score =  118 bits (295), Expect = 6e-25
 Identities = 55/88 (62%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +2

Query: 5    SWVPTISAYRSLVYGLCNIGEIDAALTLVHDCLGNVTSWPMDFEYTLSIIHACRSCDAKK 184
            S VP+++AY SL  GLC+IGEID A+ LV DCLGNVTS PM+F+YTL+++H CRS DA+K
Sbjct: 973  SSVPSVAAYCSLTKGLCDIGEIDEAMMLVRDCLGNVTSGPMEFKYTLTVLHVCRSGDAEK 1032

Query: 185  VIDI-DEMMEQGCPLNDLIYSAVISGMC 265
            VI++ +EMM + CP N++I SA+ISGMC
Sbjct: 1033 VIEVLNEMMHENCPPNEVILSAIISGMC 1060


>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Vitis vinifera]
          Length = 1294

 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/86 (61%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
 Frame = +2

Query: 11   VPTISAYRSLVYGLCNIGEIDAALTLVHDCLGNVTSWPMDFEYTLSIIHACRSCDAKKVI 190
            +P+++AYRSLV GLC   EIDAA+ LV DCL NVTS PM+F+YTL+I+HAC+S +A+KVI
Sbjct: 1072 LPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVI 1131

Query: 191  DI-DEMMEQGCPLNDLIYSAVISGMC 265
            D+ +EMM++GC  +++ YSA+ISGMC
Sbjct: 1132 DVLNEMMQEGCTPDEVTYSALISGMC 1157


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/86 (61%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
 Frame = +2

Query: 11  VPTISAYRSLVYGLCNIGEIDAALTLVHDCLGNVTSWPMDFEYTLSIIHACRSCDAKKVI 190
           +P+++AYRSLV GLC   EIDAA+ LV DCL NVTS PM+F+YTL+I+HAC+S +A+KVI
Sbjct: 568 LPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVI 627

Query: 191 DI-DEMMEQGCPLNDLIYSAVISGMC 265
           D+ +EMM++GC  +++ YSA+ISGMC
Sbjct: 628 DVLNEMMQEGCTPDEVTYSALISGMC 653


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/88 (59%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +2

Query: 5   SWVPTISAYRSLVYGLCNIGEIDAALTLVHDCLGNVTSWPMDFEYTLSIIHACRSCDAKK 184
           S +P+++AY SL  GLC IGEID A+ LV DCLGNV+  P++F+Y+L+IIHAC+S  A+K
Sbjct: 578 SCIPSVAAYSSLTKGLCQIGEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHACKSNVAEK 637

Query: 185 VIDI-DEMMEQGCPLNDLIYSAVISGMC 265
           VID+ +EM+EQGC L+++IY ++ISGMC
Sbjct: 638 VIDVLNEMIEQGCSLDNVIYCSIISGMC 665


>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
           predicted protein [Populus trichocarpa]
          Length = 728

 Score =  110 bits (275), Expect = 1e-22
 Identities = 51/86 (59%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
 Frame = +2

Query: 11  VPTISAYRSLVYGLCNIGEIDAALTLVHDCLGNVTSWPMDFEYTLSIIHACRSCDAKKVI 190
           VP+++AY SL  GLC+ GEIDAA+ LV DCL +V S PM+F+Y+L+I+HAC++  A+KVI
Sbjct: 575 VPSVAAYCSLAKGLCDNGEIDAAMMLVRDCLASVESGPMEFKYSLTILHACKTGGAEKVI 634

Query: 191 DI-DEMMEQGCPLNDLIYSAVISGMC 265
           D+ +EMM++GC  N++IYSA+ISGMC
Sbjct: 635 DVLNEMMQEGCTPNEVIYSAIISGMC 660