BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038626
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago tr...    77   2e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    60   2e-07
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    57   2e-06
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago truncatula]
          Length = 814

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/111 (32%), Positives = 62/111 (55%)
 Frame = -3

Query: 344 NVRGLNNHNKARNLNKFIVEIKLSCMGILETKVRMEKFSTIAGMVCPSWGIIHNYSSDEY 165
           NVRG N   K + +  F+++ K     ++ET+++ +KF+ I+ M+   W +++NY S   
Sbjct: 524 NVRGCNKPFKQKEIKNFLLKNKFDMCILVETRIKADKFNKISSMIFKRWPVLNNYDSAAN 583

Query: 164 GRI*FTWDKSILEVQREVEGAQFIHCKVHSLQYGFSFLLTVTYASNKRHER 12
           GRI  +W+ ++L+V+     AQ IHC+V +L     F     YA N   +R
Sbjct: 584 GRIWVSWNPTVLDVKPIASSAQAIHCEVDNLTSSECFNFVAVYAFNTLEQR 634


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 54/114 (47%)
 Frame = -3

Query: 344 NVRGLNNHNKARNLNKFIVEIKLSCMGILETKVRMEKFSTIAGMVCPSWGIIHNYSSDEY 165
           NVRGLN  +K   + K+I E       ++ET+V+  K S + G +   W I+ NY  +  
Sbjct: 7   NVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNRR 66

Query: 164 GRI*FTWDKSILEVQREVEGAQFIHCKVHSLQYGFSFLLTVTYASNKRHERLIL 3
           GRI   W K++  +    +  Q + C V        F  +  YASN   ER +L
Sbjct: 67  GRIWVLWRKNV-RLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVL 119


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
 Frame = -3

Query: 344 NVRGLNNHNKARNLNKFIVEIKLSCMGILETKVRMEKFSTIAGMVCPSWGIIHNYSSDEY 165
           N+RGLN+ N+ R +  +I    L     LET V  E  +++     P W +  NY   E 
Sbjct: 7   NIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSEL 66

Query: 164 GRI*FTWDKSI-LEVQREVEGAQFIHCKVHSLQYGFSFLLTVTYASNKRHER 12
           GRI   WD SI + V +  +   F   K+ SL    SF +   Y  N   +R
Sbjct: 67  GRIWIVWDPSISVLVFKRTDQIMFCSIKIPSLLQ--SFAVAFVYGRNSELDR 116


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/106 (28%), Positives = 53/106 (50%)
 Frame = -3

Query: 344 NVRGLNNHNKARNLNKFIVEIKLSCMGILETKVRMEKFSTIAGMVCPSWGIIHNYSSDEY 165
           N+RGLN+  K   L + I + +++  G++ET+V+ +    ++ ++  SW  ++NY     
Sbjct: 7   NIRGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKDNVSQLLLRSWSFLYNYDFSCR 66

Query: 164 GRI*FTWDKSILEVQREVEGAQFIHCKVHSLQYGFSFLLTVTYASN 27
           GRI   W+   ++V       Q IH  V  L    SF  ++ Y  N
Sbjct: 67  GRIWVCWNADTVKVDVFGMSDQAIHVSVTILATNISFNTSIIYGDN 112


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/106 (27%), Positives = 54/106 (50%)
 Frame = -3

Query: 344 NVRGLNNHNKARNLNKFIVEIKLSCMGILETKVRMEKFSTIAGMVCPSWGIIHNYSSDEY 165
           N+RGLN+  K   L++ I + +++  G++ET+V+ +    ++ ++  SW  ++NY     
Sbjct: 461 NIRGLNDPIKHSELHRLIHQERITLFGLVETRVKDKNKDNVSQLLLRSWSFLYNYDFSCR 520

Query: 164 GRI*FTWDKSILEVQREVEGAQFIHCKVHSLQYGFSFLLTVTYASN 27
           GRI   W+   ++V       + IH  V  L    SF  ++ Y  N
Sbjct: 521 GRIWVCWNADTVKVDVFGMSDEAIHVSVTILATNISFNTSIIYGDN 566