BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038578
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07
ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07
ref|XP_002514235.1| pentatricopeptide repeat-containing protein,...    57   2e-06

>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
           [Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
           protein product [Vitis vinifera]
          Length = 479

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
 Frame = -2

Query: 347 MIKFHPRLLILFRAQSSKCLTSLPSSPTFIQPNGFSNTQHQTQIEMNFNANSAHIS---- 180
           M  F P LL L   Q  K     P + +    N  + T H    + NF   +   S    
Sbjct: 1   MTSFQPPLLRLSIVQIPK-----PQTISRHLCNYLATTTHSVDAQFNFQPTAHPPSPDPI 55

Query: 179 ---AQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRPYVRFDSPSLALG 9
              AQ IA+HLS C +L  LNQ+   IIRT  ++L    F WNNIIR Y R ++   AL 
Sbjct: 56  QDTAQTIASHLSKCANLIELNQLLAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALS 115

Query: 8   VY 3
           +Y
Sbjct: 116 IY 117


>ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|222832075|gb|EEE70552.1|
           predicted protein [Populus trichocarpa]
          Length = 254

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = -2

Query: 179 AQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRPYVRFDSPSLALGVY 3
           ++ IAT LSNCTSL  LNQ +  +IRT  + +    F WNN+IR Y R  +P+ AL +Y
Sbjct: 6   SKTIATQLSNCTSLQELNQTYAHVIRTHVLDVYTAPFHWNNLIRCYTRLGAPNKALQIY 64


>ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 609

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = -2

Query: 239 NTQHQTQIEMNFNANSAHISAQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWN 60
           N   +T   + + + +    A+++AT L NCT++  L QIH  ++RT+ ++   ++F+WN
Sbjct: 169 NAVTETPFWLTYTSYNNMDHARIVATLLMNCTNVLELYQIHAHVLRTNMLENHPSSFYWN 228

Query: 59  NIIRPYVRFDSPSLALGVY 3
            IIR Y R + P +AL VY
Sbjct: 229 IIIRSYTRLEVPRIALFVY 247


>ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 614

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = -2

Query: 239 NTQHQTQIEMNFNANSAHISAQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWN 60
           N   +T   + + + +    A+++AT L NCT++  L QIH  ++RT+ ++   ++F+WN
Sbjct: 174 NAVTETPFWLTYTSYNNVDHARIVATLLMNCTNVLELYQIHAHVLRTNMLENHPSSFYWN 233

Query: 59  NIIRPYVRFDSPSLALGVY 3
            IIR Y R + P +AL VY
Sbjct: 234 IIIRSYTRLEVPRIALFVY 252


>ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546691|gb|EEF48189.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 352

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/64 (48%), Positives = 37/64 (57%)
 Frame = -2

Query: 194 SAHISAQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRPYVRFDSPSLA 15
           SA   A+  AT  SNCT+L  LNQI+  II +  +      F WNNIIR Y R D+P  A
Sbjct: 48  SAQDIAKWAATQSSNCTTLRDLNQIYAHIICSDLLHFYSAPFHWNNIIRSYTRLDAPVKA 107

Query: 14  LGVY 3
           L VY
Sbjct: 108 LQVY 111