BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038559
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   144   8e-33
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...   132   4e-29
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   122   4e-26
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...   115   5e-24
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...   103   1e-20

>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  144 bits (363), Expect = 8e-33
 Identities = 68/112 (60%), Positives = 90/112 (80%)
 Frame = -1

Query: 420 CSSLVEHYCSIGEIDLAVVLNDKIQKIGGTLDVTTYNVLLIGLLKQRKKGGALQVFDYMR 241
           CS+LVEHYC   +ID ++ L++KI+K+ G+LDV TYNVLL GL  +++   A+ VFD MR
Sbjct: 457 CSALVEHYCRSRQIDSSIALHEKIKKVKGSLDVATYNVLLNGLFMEKRIEDAVSVFDCMR 516

Query: 240 RRNVVSSISFSIMILGLCREREMRKAMEIHDDMLKMGLKPDEATYKHLIAKF 85
            +N++SS SF+IM+ GLCRERE+RKAM+ HD+MLKMGLKPD ATYK LI+ F
Sbjct: 517 SQNLLSSTSFTIMVSGLCRERELRKAMKFHDEMLKMGLKPDRATYKRLISGF 568


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score =  132 bits (331), Expect = 4e-29
 Identities = 64/112 (57%), Positives = 86/112 (76%)
 Frame = -1

Query: 420 CSSLVEHYCSIGEIDLAVVLNDKIQKIGGTLDVTTYNVLLIGLLKQRKKGGALQVFDYMR 241
           C SLVEHYCS  +ID AV L++K++K+  +LDV TYN+LL GL+K  +    ++VFDYM+
Sbjct: 451 CCSLVEHYCSRRQIDKAVALHNKMEKLQASLDVATYNILLDGLVKNGRIEEVVRVFDYMK 510

Query: 240 RRNVVSSISFSIMILGLCREREMRKAMEIHDDMLKMGLKPDEATYKHLIAKF 85
              +V+S SF+I I GLCR +EMRKAM++HD+ML MGLKPD+A YK LI +F
Sbjct: 511 GLKLVNSESFTITIRGLCRAKEMRKAMKLHDEMLDMGLKPDKAAYKRLILEF 562


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  122 bits (305), Expect = 4e-26
 Identities = 55/110 (50%), Positives = 85/110 (77%)
 Frame = -1

Query: 414 SLVEHYCSIGEIDLAVVLNDKIQKIGGTLDVTTYNVLLIGLLKQRKKGGALQVFDYMRRR 235
           SLV+HYCS  + D A+ L++ ++K+  +LD+T YN+LL GL+K+ +   +++VFDYM+  
Sbjct: 482 SLVKHYCSSKQTDKALALHNTLEKLQASLDITAYNLLLGGLVKEGRVEESIKVFDYMKGL 541

Query: 234 NVVSSISFSIMILGLCREREMRKAMEIHDDMLKMGLKPDEATYKHLIAKF 85
            + +S SF+++I GLCR +E+RKAM++HD+ML MGLKPD+ TYK LI +F
Sbjct: 542 KLANSASFTVIIRGLCRAKELRKAMKLHDEMLNMGLKPDKPTYKRLILEF 591


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/114 (50%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
 Frame = -1

Query: 420 CSSLVEHYCSIGEIDLAVVLNDKIQKIGGTLDVTTYNVLLIGLLKQRKK--GGALQVFDY 247
           C  L+E YC  G+++ A+VL++KI+K+ G+LDV  YN +L  L+ ++K+    A+ VF+Y
Sbjct: 471 CGLLMERYCRSGKLEKALVLHEKIKKMKGSLDVNAYNAVLDRLMMRQKEMVEEAVVVFEY 530

Query: 246 MRRRNVVSSISFSIMILGLCREREMRKAMEIHDDMLKMGLKPDEATYKHLIAKF 85
           M+  N V+S SF+IMI GLCR +EM+KAM  HD+ML++GLKPD  TYK LI  F
Sbjct: 531 MKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPDLVTYKRLILGF 584


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score =  103 bits (257), Expect = 1e-20
 Identities = 53/103 (51%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
 Frame = -1

Query: 387 GEIDLAVVLNDKIQKIGGTLDVTTYNVLLIGLLKQRKK--GGALQVFDYMRRRNVVSSIS 214
           G+++ A+VL++KI+K+ G+LDV  YN +L  L+ ++K+    A+ VF+YM+  N V+S S
Sbjct: 448 GKLEKALVLHEKIKKMKGSLDVNAYNAVLDRLMMRQKEMVEEAVVVFEYMKEINSVNSKS 507

Query: 213 FSIMILGLCREREMRKAMEIHDDMLKMGLKPDEATYKHLIAKF 85
           F+IMI GLCR +EM+KAM  HD+ML++GLKPD  TYK LI  F
Sbjct: 508 FTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPDLVTYKRLILGF 550