BLASTX nr result
ID: Coptis25_contig00038512
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00038512
(339 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi... 154 5e-36
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 149 2e-34
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi... 149 2e-34
gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Me... 143 2e-32
ref|XP_003605160.1| Pentatricopeptide repeat-containing protein ... 143 2e-32
>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 154 bits (390), Expect = 5e-36
Identities = 72/111 (64%), Positives = 92/111 (82%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
+ EM+ + PDEVTMIGVVSSCAQ+EDL LG+E H +IEENG++LT+PL+NALMDMY+K
Sbjct: 196 YREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMK 255
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEMPERDAV 6
CG+LE A+ LF MT KTMV+WTTM+VG+A+ G LD A LF+EMP++D V
Sbjct: 256 CGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306
Score = 86.3 bits (212), Expect = 2e-15
Identities = 41/105 (39%), Positives = 64/105 (60%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
F EMQ N+ PDEVTM+ +S+C+Q+ L +G H +IE++ + L + L AL+DMY K
Sbjct: 328 FNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAK 387
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
CG + A +F+++ + +TWT ++ G A G A F+EM
Sbjct: 388 CGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEM 432
Score = 58.2 bits (139), Expect = 7e-07
Identities = 29/95 (30%), Positives = 52/95 (54%)
Frame = -2
Query: 308 PDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVKCGSLEPAQVL 129
PD T + +CA++ +++G E + G I +SNA++ + V CG L+ A+ +
Sbjct: 105 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKM 164
Query: 128 FRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
F K + +V+W +M+ G+ R G+ A N + EM
Sbjct: 165 FDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREM 199
>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 149 bits (376), Expect = 2e-34
Identities = 68/109 (62%), Positives = 92/109 (84%)
Frame = -2
Query: 332 EMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVKCG 153
+M E NVMPDEVTMIGVVS+ AQ+E+L LG++ H+ IEE G+ LT+PL+NALMDMY+KC
Sbjct: 246 KMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCK 305
Query: 152 SLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEMPERDAV 6
++E A++LF MT+KT+V+WTTM++G+A+ G L+SA LFNEMPE+D V
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVV 354
Score = 83.2 bits (204), Expect = 2e-14
Identities = 36/105 (34%), Positives = 68/105 (64%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
F EMQ ++V PD++T++ +S+C+Q+ L +G H +++++ + + + L AL+DMY K
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
CG+++ A +F +M + +TWT ++ G A G +A + F+EM
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEM 480
>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 149 bits (376), Expect = 2e-34
Identities = 68/109 (62%), Positives = 92/109 (84%)
Frame = -2
Query: 332 EMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVKCG 153
+M E NVMPDEVTMIGVVS+ AQ+E+L LG++ H+ IEE G+ LT+PL+NALMDMY+KC
Sbjct: 246 KMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCK 305
Query: 152 SLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEMPERDAV 6
++E A++LF MT+KT+V+WTTM++G+A+ G L+SA LFNEMPE+D V
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVV 354
Score = 83.2 bits (204), Expect = 2e-14
Identities = 36/105 (34%), Positives = 68/105 (64%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
F EMQ ++V PD++T++ +S+C+Q+ L +G H +++++ + + + L AL+DMY K
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
CG+++ A +F +M + +TWT ++ G A G +A + F+EM
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEM 480
>gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 143 bits (360), Expect = 2e-32
Identities = 64/111 (57%), Positives = 89/111 (80%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
+ EM+ V P+E+TMIG++SSC+Q++DL LGKEFH +I+E+G+ TIPL+NALMDMYVK
Sbjct: 247 YKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVK 306
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEMPERDAV 6
CG L A+VLF M +KT+V+WTTM++G+AR GFLD AR + ++PE+ V
Sbjct: 307 CGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357
Score = 80.9 bits (198), Expect = 1e-13
Identities = 37/105 (35%), Positives = 64/105 (60%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
F EMQ + PD+VTM+ +S+C+Q+ L +G H +IE + + + + L AL+DMY K
Sbjct: 379 FHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAK 438
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
CG++ A +F ++ ++ +TWT ++ G A G A + F++M
Sbjct: 439 CGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKM 483
>ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 143 bits (360), Expect = 2e-32
Identities = 64/111 (57%), Positives = 89/111 (80%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
+ EM+ V P+E+TMIG++SSC+Q++DL LGKEFH +I+E+G+ TIPL+NALMDMYVK
Sbjct: 247 YKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVK 306
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEMPERDAV 6
CG L A+VLF M +KT+V+WTTM++G+AR GFLD AR + ++PE+ V
Sbjct: 307 CGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357
Score = 80.9 bits (198), Expect = 1e-13
Identities = 37/105 (35%), Positives = 64/105 (60%)
Frame = -2
Query: 338 FGEMQEANVMPDEVTMIGVVSSCAQIEDLKLGKEFHKFIEENGIRLTIPLSNALMDMYVK 159
F EMQ + PD+VTM+ +S+C+Q+ L +G H +IE + + + + L AL+DMY K
Sbjct: 379 FHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAK 438
Query: 158 CGSLEPAQVLFRKMTRKTMVTWTTMLVGFARCGFLDSARNLFNEM 24
CG++ A +F ++ ++ +TWT ++ G A G A + F++M
Sbjct: 439 CGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKM 483