BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038504
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th...   188   5e-46
gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thal...   188   5e-46
ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat...   184   5e-45
ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat...   184   5e-45
ref|XP_002884496.1| pentatricopeptide repeat-containing protein ...   184   7e-45

>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
           gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g05240 gi|332640689|gb|AEE74210.1|
           mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  188 bits (477), Expect = 5e-46
 Identities = 83/155 (53%), Positives = 116/155 (74%)
 Frame = -3

Query: 466 DFLTNKESPHDLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTP 287
           DF T      +L YA +VF  I  PSVYIWNSMI+G+SN+ NP+ AL+ Y+EM   GY+P
Sbjct: 46  DFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSP 105

Query: 286 DHFTFPFVLKACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLF 107
           D+FTFP+VLKAC+ + DI+FG CVH  + K G+E ++Y ST L+H+Y+CC ++  G ++F
Sbjct: 106 DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVF 165

Query: 106 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEME 2
           E+ P+WNVV W +LI+G+VNN+R SDAI  F+EM+
Sbjct: 166 EDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQ 200



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/145 (28%), Positives = 77/145 (53%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           DL  A  +F  + + ++  WNS+I G+S   +   AL M+ +M  LG  PD  TF  V++
Sbjct: 266 DLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 325

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVG 77
           A       + G+ +H+ + K G+  D     +L+++Y    D  S +K FE+  K + + 
Sbjct: 326 ASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIA 385

Query: 76  WTTLIAGYVNNDRASDAIRVFKEME 2
           WT +I G  ++   ++A+ +F+ M+
Sbjct: 386 WTVVIIGLASHGHGNEALSIFQRMQ 410



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           +++Y   VF  I + +V  W S+I G  N +  + A+  +REMQ  G   +      +L 
Sbjct: 157 EVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLV 216

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYS--------STSLMHVYVCCADLGSGEKLFEE 101
           AC    DI  GK  H  +   G++    S        +TSL+ +Y  C DL +   LF+ 
Sbjct: 217 ACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDG 276

Query: 100 SPKWNVVGWTTLIAGYVNNDRASDAIRVFKEM 5
            P+  +V W ++I GY  N  A +A+ +F +M
Sbjct: 277 MPERTLVSWNSIITGYSQNGDAEEALCMFLDM 308


>gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  188 bits (477), Expect = 5e-46
 Identities = 83/155 (53%), Positives = 116/155 (74%)
 Frame = -3

Query: 466 DFLTNKESPHDLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTP 287
           DF T      +L YA +VF  I  PSVYIWNSMI+G+SN+ NP+ AL+ Y+EM   GY+P
Sbjct: 46  DFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSP 105

Query: 286 DHFTFPFVLKACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLF 107
           D+FTFP+VLKAC+ + DI+FG CVH  + K G+E ++Y ST L+H+Y+CC ++  G ++F
Sbjct: 106 DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVF 165

Query: 106 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEME 2
           E+ P+WNVV W +LI+G+VNN+R SDAI  F+EM+
Sbjct: 166 EDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQ 200



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/145 (28%), Positives = 77/145 (53%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           DL  A  +F  + + ++  WNS+I G+S   +   AL M+ +M  LG  PD  TF  V++
Sbjct: 249 DLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 308

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVG 77
           A       + G+ +H+ + K G+  D     +L+++Y    D  S +K FE+  K + + 
Sbjct: 309 ASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIA 368

Query: 76  WTTLIAGYVNNDRASDAIRVFKEME 2
           WT +I G  ++   ++A+ +F+ M+
Sbjct: 369 WTVVIIGLASHGHGNEALSIFQRMQ 393



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 44/144 (30%), Positives = 70/144 (48%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           +++Y   VF  I + +V  W S+I G  N +  + A+  +REMQ  G   +      +L 
Sbjct: 157 EVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLV 216

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVG 77
           AC    D  F         K G+   L  +TSL+ +Y  C DL +   LF+  P+  +V 
Sbjct: 217 ACGRCFDPYFQS-------KVGFNVIL--ATSLIDMYAKCGDLRTARYLFDGMPERTLVS 267

Query: 76  WTTLIAGYVNNDRASDAIRVFKEM 5
           W ++I GY  N  A +A+ +F +M
Sbjct: 268 WNSIITGYSQNGDAEEALCMFLDM 291


>ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
           gi|449525900|ref|XP_004169954.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  184 bits (468), Expect = 5e-45
 Identities = 87/155 (56%), Positives = 116/155 (74%)
 Frame = -3

Query: 466 DFLTNKESPHDLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTP 287
           DF  N E   D+ YA TVF +I + +VYIWNSMIKG+ N  +  GAL MY EMQ  G++P
Sbjct: 45  DFCANSELG-DIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSP 103

Query: 286 DHFTFPFVLKACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLF 107
           DHFTFPFVLK C+ +  + +G+ VH+RI K G+E D+Y+S+ L+++YV C DL SG K+F
Sbjct: 104 DHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVF 163

Query: 106 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEME 2
           E  PKWNVV WT+LIAG+VNND+  +A+R+FK+ME
Sbjct: 164 EFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDME 198



 Score = 92.0 bits (227), Expect = 5e-17
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           DL+    VF  I K +V  W S+I G  N D P  AL ++++M+  G  P+  T    L 
Sbjct: 155 DLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALA 214

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYES-------DLYSSTSLMHVYVCCADLGSGEKLFEES 98
           A A   DI  GK VH R+ + G++        ++  +T++M +Y  C  L +   LF++ 
Sbjct: 215 AAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKM 274

Query: 97  PKWNVVGWTTLIAGYVNNDRASDAIRVFKEME 2
           P+ N+V W ++I+ Y    R ++A+R+F +ME
Sbjct: 275 PQRNLVVWNSMISAYSQYGRGAEALRLFVDME 306



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 40/141 (28%), Positives = 76/141 (53%)
 Frame = -3

Query: 424 AETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLKACAA 245
           A  +F ++ + ++ +WNSMI  +S       AL ++ +M++ G+ P+  TF  V+ AC  
Sbjct: 267 ARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTH 326

Query: 244 VLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVGWTTL 65
           +     G+ +H+R  +  +   +   T+LM +Y    D  +  K+F +  K +V+ WTT+
Sbjct: 327 MGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTM 386

Query: 64  IAGYVNNDRASDAIRVFKEME 2
           I+G     +  +A+ VF+ ME
Sbjct: 387 ISGLAIQGKGKEALNVFRRME 407


>ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  184 bits (468), Expect = 5e-45
 Identities = 84/154 (54%), Positives = 115/154 (74%)
 Frame = -3

Query: 466 DFLTNKESPHDLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTP 287
           DF  + E   D++YA+ V  +I  PSVYIWNSMI+G  N+ NP  ++L+YR+M   GY+P
Sbjct: 44  DFCVDSEFG-DINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSP 102

Query: 286 DHFTFPFVLKACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLF 107
           DHFTFPFVLKAC  + D   GKC+HS I K+G+E+D Y++T L+H+YV CAD+ SG K+F
Sbjct: 103 DHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVF 162

Query: 106 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEM 5
           +  PKWNVV WT LIAGYV N++  +A++VF++M
Sbjct: 163 DNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDM 196



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/144 (29%), Positives = 79/144 (54%)
 Frame = -3

Query: 433 LHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLKA 254
           L  A  +F ++ + ++  WNSMI  ++  +    AL ++ +M   G  PD  TF  VL  
Sbjct: 263 LKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSV 322

Query: 253 CAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVGW 74
           CA    +  G+ VH+ + K G  +D+  +T+L+ +Y    +LG+ +K+F    K +VV W
Sbjct: 323 CAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMW 382

Query: 73  TTLIAGYVNNDRASDAIRVFKEME 2
           T++I G   +   ++A+ +F+ M+
Sbjct: 383 TSMINGLAMHGHGNEALSMFQTMQ 406



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           D+     VF  I K +V  W  +I G+   + P  AL ++ +M      P+  T    L 
Sbjct: 154 DMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALI 213

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYE-------SDLYSSTSLMHVYVCCADLGSGEKLFEES 98
           ACA   DI  G+ VH RI K GY+       S++  +T+++ +Y  C  L     LF + 
Sbjct: 214 ACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKM 273

Query: 97  PKWNVVGWTTLIAGYVNNDRASDAIRVFKEM 5
           P+ N+V W ++I  Y   +R  +A+ +F +M
Sbjct: 274 PQRNIVSWNSMINAYNQYERHQEALDLFFDM 304


>ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330336|gb|EFH60755.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score =  184 bits (467), Expect = 7e-45
 Identities = 83/155 (53%), Positives = 115/155 (74%)
 Frame = -3

Query: 466 DFLTNKESPHDLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTP 287
           DF T      +L YA +VF  I  PSVYIWNSMI+G+SN+ NP+ AL+ Y+EM   GY+P
Sbjct: 45  DFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSP 104

Query: 286 DHFTFPFVLKACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLF 107
           D+FTFP+VLKAC+ + DI+FG CVH  + K G+E ++Y ST L+H+Y+CC ++  G ++F
Sbjct: 105 DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVF 164

Query: 106 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEME 2
           E+ PK NVV W +LI+G+VNN+R SDAI  F+EM+
Sbjct: 165 EDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQ 199



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/145 (26%), Positives = 77/145 (53%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           D+  A  +F  + + ++  WNS+I G+S   +   A+ M+ +M  LG  PD  TF  V++
Sbjct: 248 DMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIR 307

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVG 77
           A       + G+ +H+ + K G+  D     +L+++Y    +  S +K+FE+  K + + 
Sbjct: 308 ASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIA 367

Query: 76  WTTLIAGYVNNDRASDAIRVFKEME 2
           WT +I G  ++   + A+ +F+ M+
Sbjct: 368 WTVVIIGLASHGHGNKALSIFQRMQ 392



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 43/144 (29%), Positives = 76/144 (52%)
 Frame = -3

Query: 436 DLHYAETVFVRIKKPSVYIWNSMIKGHSNTDNPNGALLMYREMQVLGYTPDHFTFPFVLK 257
           ++++   VF  I K +V  W S+I G  N +  + A+  +REMQ +G  P+      +L 
Sbjct: 156 EVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLV 215

Query: 256 ACAAVLDIRFGKCVHSRIFKNGYESDLYSSTSLMHVYVCCADLGSGEKLFEESPKWNVVG 77
           AC        G+C      ++ +E ++  +TSL+ +Y  C D+ +   LF+  P+ N+V 
Sbjct: 216 AC--------GRCFDPYC-QSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVS 266

Query: 76  WTTLIAGYVNNDRASDAIRVFKEM 5
           W ++I GY  N  A +A+ +F +M
Sbjct: 267 WNSIITGYSQNGDAEEAMCMFSDM 290