BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038485
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    86   3e-15
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]                          85   7e-15
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    84   9e-15
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              84   9e-15
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    84   9e-15

>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 31/87 (35%), Positives = 58/87 (66%)
 Frame = -3

Query: 263  RKTSKVVDDINKIFRNFLWTDPDCKQSHALIGWDDICYPYEEGGLGIRNIEKVNQAATMK 84
            R   + + DI+K+  +FLW+  D     A + WDD+C P +EGGLG+R++++ N    +K
Sbjct: 787  RLPRECIRDIDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGGLGLRSLKEANDVCCLK 846

Query: 83   PLWKLITRTDNLWVQWVQKYLVRRRGF 3
             +WK+++  ++LWV+W++K+L++   F
Sbjct: 847  VVWKIVSHGNSLWVKWIEKFLLKNETF 873


>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
          Length = 382

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 31/81 (38%), Positives = 54/81 (66%)
 Frame = -3

Query: 245 VDDINKIFRNFLWTDPDCKQSHALIGWDDICYPYEEGGLGIRNIEKVNQAATMKPLWKLI 66
           + +I K+   FLW+ PD     A + W D+C P +EGGLG+R ++++N    +K +W+L+
Sbjct: 253 IKEIEKLCSAFLWSGPDLNPHKAKLSWVDVCKPKQEGGLGLRPLKEINDVCCLKLIWRLV 312

Query: 65  TRTDNLWVQWVQKYLVRRRGF 3
           +  ++LWVQW++KYL++   F
Sbjct: 313 SHANSLWVQWIEKYLLKADTF 333


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 35/81 (43%), Positives = 56/81 (69%)
 Frame = -3

Query: 251 KVVDDINKIFRNFLWTDPDCKQSHALIGWDDICYPYEEGGLGIRNIEKVNQAATMKPLWK 72
           KV  D++KI R +LW   +  +S A +GWD++C P++EGGL IR+    N A+T+K LW 
Sbjct: 2   KVHRDVDKILRAYLWRGKEEGRSGAKVGWDEVCLPFDEGGLNIRDGSSWNIASTLKILWL 61

Query: 71  LITRTDNLWVQWVQKYLVRRR 9
           L+ ++ +LWV WV+ Y+++ R
Sbjct: 62  LLVKSGSLWVSWVESYILKGR 82


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 30/87 (34%), Positives = 60/87 (68%)
 Frame = -3

Query: 263 RKTSKVVDDINKIFRNFLWTDPDCKQSHALIGWDDICYPYEEGGLGIRNIEKVNQAATMK 84
           R   + + +I+KI   FLW+ PD       + W D+C P +EGGLG+R+++++N+ + +K
Sbjct: 357 RLPRECIREIDKICSAFLWSGPDLNPRKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLK 416

Query: 83  PLWKLITRTDNLWVQWVQKYLVRRRGF 3
            +W++++ T++LWV+W+++YL++   F
Sbjct: 417 LIWRIVSHTNSLWVRWIEQYLLKHDTF 443


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 32/87 (36%), Positives = 58/87 (66%)
 Frame = -3

Query: 263 RKTSKVVDDINKIFRNFLWTDPDCKQSHALIGWDDICYPYEEGGLGIRNIEKVNQAATMK 84
           R   + V +I+K+   FLW+ P+   + A I W+ +C P  EGGLG+++I++ N    +K
Sbjct: 348 RLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLK 407

Query: 83  PLWKLITRTDNLWVQWVQKYLVRRRGF 3
            +W+++++ D+LWVQW++ YL++R  F
Sbjct: 408 LIWRIVSQGDSLWVQWIRTYLLKRNTF 434