BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038475
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   103   3e-30
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   107   2e-28
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   107   2e-28
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-27
emb|CBI22269.3| unnamed protein product [Vitis vinifera]              102   3e-27

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  103 bits (257), Expect(2) = 3e-30
 Identities = 45/67 (67%), Positives = 55/67 (82%)
 Frame = -1

Query: 313 RTPTWVSRRRLLEQKISDLHKCTNLNHLKQIQAQIFKSNLHQDLYIAPKLITAFSNCRQI 134
           R PTWVS RRL E+K+ DLHKCT+ NH+K++ AQI K NLH DLY+APKLI+AFS C Q+
Sbjct: 12  RAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQM 71

Query: 133 SLAYNVF 113
           +LA NVF
Sbjct: 72  NLAVNVF 78



 Score = 53.1 bits (126), Expect(2) = 3e-30
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -3

Query: 113 LYNTLITAYTQNLLYSKAFSVFFDMQRNSVFADNFAY 3
           LYNTLI A+ QN    KAF+ FFDMQ+N +FADNF Y
Sbjct: 88  LYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTY 124


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  107 bits (268), Expect(2) = 2e-28
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = -1

Query: 334 KMSTVAIRTPTWVSRRRLLEQKISDLHKCTNLNHLKQIQAQIFKSNLHQDLYIAPKLITA 155
           +M +V IRTP+W S R+LLEQK+SDLHKCTNLN +KQ+ AQI KSNLH DL++ PKLI+A
Sbjct: 2   QMCSVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISA 61

Query: 154 FSNCRQISLAYNVF 113
           FS CRQ+ LA N F
Sbjct: 62  FSLCRQMLLATNAF 75



 Score = 43.1 bits (100), Expect(2) = 2e-28
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = -3

Query: 113 LYNTLITAYTQNLLYSKAFSVFFDMQRNSVFADNFAY 3
           LYNT+I A++ N   S+AF+ FF MQR+  +ADNF +
Sbjct: 85  LYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTF 121


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  107 bits (268), Expect(2) = 2e-28
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = -1

Query: 334 KMSTVAIRTPTWVSRRRLLEQKISDLHKCTNLNHLKQIQAQIFKSNLHQDLYIAPKLITA 155
           +M +V IRTP+W S R+LLEQK+SDLHKCTNLN +KQ+ AQI KSNLH DL++ PKLI+A
Sbjct: 28  QMCSVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISA 87

Query: 154 FSNCRQISLAYNVF 113
           FS CRQ+ LA N F
Sbjct: 88  FSLCRQMLLATNAF 101



 Score = 43.1 bits (100), Expect(2) = 2e-28
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = -3

Query: 113 LYNTLITAYTQNLLYSKAFSVFFDMQRNSVFADNFAY 3
           LYNT+I A++ N   S+AF+ FF MQR+  +ADNF +
Sbjct: 111 LYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTF 147


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  102 bits (253), Expect(2) = 3e-27
 Identities = 46/71 (64%), Positives = 60/71 (84%)
 Frame = -1

Query: 325 TVAIRTPTWVSRRRLLEQKISDLHKCTNLNHLKQIQAQIFKSNLHQDLYIAPKLITAFSN 146
           +V IR PTWVS+RRLLEQKISDLH+C++LN +KQI AQ+ K+NLH++ ++  KLI AFS 
Sbjct: 2   SVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSL 61

Query: 145 CRQISLAYNVF 113
           CRQ++LA NVF
Sbjct: 62  CRQMTLAVNVF 72



 Score = 44.7 bits (104), Expect(2) = 3e-27
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -3

Query: 116 ILYNTLITAYTQNLLYSKAFSVFFDMQRNSVFADNFAY 3
           +LYNTLI A+ +N     AFSVFF+MQ + V ADNF Y
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTY 118


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  102 bits (253), Expect(2) = 3e-27
 Identities = 46/71 (64%), Positives = 60/71 (84%)
 Frame = -1

Query: 325 TVAIRTPTWVSRRRLLEQKISDLHKCTNLNHLKQIQAQIFKSNLHQDLYIAPKLITAFSN 146
           +V IR PTWVS+RRLLEQKISDLH+C++LN +KQI AQ+ K+NLH++ ++  KLI AFS 
Sbjct: 2   SVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSL 61

Query: 145 CRQISLAYNVF 113
           CRQ++LA NVF
Sbjct: 62  CRQMTLAVNVF 72



 Score = 44.7 bits (104), Expect(2) = 3e-27
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -3

Query: 116 ILYNTLITAYTQNLLYSKAFSVFFDMQRNSVFADNFAY 3
           +LYNTLI A+ +N     AFSVFF+MQ + V ADNF Y
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTY 118