BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038472
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004563917.1| NADH-plastoquinone oxidoreductase subunit 4 ...   301   7e-80
ref|YP_740701.1| NADH-plastoquinone oxidoreductase subunit 4 [Na...   301   7e-80
emb|CAP62548.1| ndhD [Ceratophyllum demersum]                         300   1e-79
ref|YP_001542497.1| NADH-plastoquinone oxidoreductase subunit 4 ...   300   1e-79
ref|YP_002836140.1| NADH-plastoquinone oxidoreductase subunit 4 ...   299   2e-79

>ref|YP_004563917.1| NADH-plastoquinone oxidoreductase subunit 4 [Nelumbo lutea]
           gi|334362100|ref|YP_004564153.1| NADH-plastoquinone
           oxidoreductase subunit 4 [Nelumbo nucifera]
           gi|224474185|gb|ACN49374.1| NADH-plastoquinone
           oxidoreductase subunit 4 [Nelumbo lutea]
           gi|224474273|gb|ACN49459.1| NADH-plastoquinone
           oxidoreductase subunit 4 [Nelumbo nucifera]
           gi|290486863|gb|ADD29816.1| NADH-plastoquinone
           oxidoreductase subunit 4 protein [Nelumbo nucifera]
           gi|383286850|gb|AFH01500.1| NADH-plastoquinone
           oxidoreductase subunit 4 (chloroplast) [Nelumbo
           nucifera] gi|383286942|gb|AFH01591.1| NADH-plastoquinone
           oxidoreductase subunit 4 (chloroplast) [Nelumbo lutea]
          Length = 500

 Score =  301 bits (770), Expect = 7e-80
 Identities = 157/190 (82%), Positives = 163/190 (85%)
 Frame = -3

Query: 570 ALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVQGSLS 391
           ALEIIFYFGFLIAYAVK PIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLV+ ++ 
Sbjct: 208 ALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINME 267

Query: 390 QLCHAHSIFSPWLMIVGTIQIIYAALTSLGQRNLKKRIAYSSVSHMXXXXXXXXXITDTG 211
            L HAHSIFSPWLMIVGTIQIIYAALTS GQRNLKKRIAYSSVSHM         ITDTG
Sbjct: 268 FLPHAHSIFSPWLMIVGTIQIIYAALTSPGQRNLKKRIAYSSVSHMGFTIIGIASITDTG 327

Query: 210 LNGAILQMISHGFIGAALFFLAGTSYDRICLVYLEEMGGIAIPIPKIFTXXXXXXXXXXX 31
           LNGAILQ+ISHGFIGAALFFLAGTSYDRI LVYL+EMGGIAIP+PKIFT           
Sbjct: 328 LNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

Query: 30  LPGMSGFVAE 1
           LPGMSGFVAE
Sbjct: 388 LPGMSGFVAE 397


>ref|YP_740701.1| NADH-plastoquinone oxidoreductase subunit 4 [Nandina domestica]
           gi|122165917|sp|Q09FR0.1|NU4C_NANDO RecName:
           Full=NAD(P)H-quinone oxidoreductase chain 4,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           chain 4; AltName: Full=NADH-plastoquinone oxidoreductase
           chain 4 gi|114054522|gb|ABI49915.1| NADH-plastoquinone
           oxidoreductase subunit 4 [Nandina domestica]
          Length = 500

 Score =  301 bits (770), Expect = 7e-80
 Identities = 156/190 (82%), Positives = 162/190 (85%)
 Frame = -3

Query: 570 ALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVQGSLS 391
           ALEI+ YFGF IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLV+ ++ 
Sbjct: 208 ALEILLYFGFFIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINME 267

Query: 390 QLCHAHSIFSPWLMIVGTIQIIYAALTSLGQRNLKKRIAYSSVSHMXXXXXXXXXITDTG 211
            L HAHSIFSPWLMIVGTIQIIYAA TSLGQRNLKKRIAYSSVSHM         ITDTG
Sbjct: 268 LLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFTILGISSITDTG 327

Query: 210 LNGAILQMISHGFIGAALFFLAGTSYDRICLVYLEEMGGIAIPIPKIFTXXXXXXXXXXX 31
           LNGAILQMISHGFIGAALFFLAGTSYDRI LVYL+EMGGIAIP+PKIFT           
Sbjct: 328 LNGAILQMISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLA 387

Query: 30  LPGMSGFVAE 1
           LPGMSGFVAE
Sbjct: 388 LPGMSGFVAE 397


>emb|CAP62548.1| ndhD [Ceratophyllum demersum]
          Length = 500

 Score =  300 bits (767), Expect = 1e-79
 Identities = 152/190 (80%), Positives = 163/190 (85%)
 Frame = -3

Query: 570 ALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVQGSLS 391
           ALEI+FYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL++ ++ 
Sbjct: 208 ALEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINME 267

Query: 390 QLCHAHSIFSPWLMIVGTIQIIYAALTSLGQRNLKKRIAYSSVSHMXXXXXXXXXITDTG 211
            L HAHSIFSPWLMIVGT+QIIYAA TS GQRNLKKRIAYSSVSHM         ITDTG
Sbjct: 268 LLPHAHSIFSPWLMIVGTVQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIIGICSITDTG 327

Query: 210 LNGAILQMISHGFIGAALFFLAGTSYDRICLVYLEEMGGIAIPIPKIFTXXXXXXXXXXX 31
           LNGA+LQ+ISHGFIGAALFFLAGTSYDRI +VYL+EMGGIAIP+PKIFT           
Sbjct: 328 LNGAVLQIISHGFIGAALFFLAGTSYDRIRIVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

Query: 30  LPGMSGFVAE 1
           LPGMSGFVAE
Sbjct: 388 LPGMSGFVAE 397


>ref|YP_001542497.1| NADH-plastoquinone oxidoreductase subunit 4 [Ceratophyllum
           demersum] gi|193806222|sp|A8SEF4.1|NU4C_CERDE RecName:
           Full=NAD(P)H-quinone oxidoreductase chain 4,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           chain 4; AltName: Full=NADH-plastoquinone oxidoreductase
           chain 4 gi|148508494|gb|ABQ81501.1| NADH-plastoquinone
           oxidoreductase subunit 4 [Ceratophyllum demersum]
          Length = 500

 Score =  300 bits (767), Expect = 1e-79
 Identities = 152/190 (80%), Positives = 163/190 (85%)
 Frame = -3

Query: 570 ALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVQGSLS 391
           ALEI+FYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL++ ++ 
Sbjct: 208 ALEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINME 267

Query: 390 QLCHAHSIFSPWLMIVGTIQIIYAALTSLGQRNLKKRIAYSSVSHMXXXXXXXXXITDTG 211
            L HAHSIFSPWLMIVGT+QIIYAA TS GQRNLKKRIAYSSVSHM         ITDTG
Sbjct: 268 LLPHAHSIFSPWLMIVGTVQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIIGICSITDTG 327

Query: 210 LNGAILQMISHGFIGAALFFLAGTSYDRICLVYLEEMGGIAIPIPKIFTXXXXXXXXXXX 31
           LNGA+LQ+ISHGFIGAALFFLAGTSYDRI +VYL+EMGGIAIP+PKIFT           
Sbjct: 328 LNGAVLQIISHGFIGAALFFLAGTSYDRIRIVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

Query: 30  LPGMSGFVAE 1
           LPGMSGFVAE
Sbjct: 388 LPGMSGFVAE 397


>ref|YP_002836140.1| NADH-plastoquinone oxidoreductase subunit 4 [Megaleranthis
           saniculifolia] gi|226933932|gb|ACO92065.1|
           NADH-plastoquinone oxidoreductase subunit 4
           [Megaleranthis saniculifolia]
          Length = 500

 Score =  299 bits (765), Expect = 2e-79
 Identities = 156/190 (82%), Positives = 161/190 (84%)
 Frame = -3

Query: 570 ALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVQGSLS 391
           ALEII YFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLV+ ++ 
Sbjct: 208 ALEIILYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINME 267

Query: 390 QLCHAHSIFSPWLMIVGTIQIIYAALTSLGQRNLKKRIAYSSVSHMXXXXXXXXXITDTG 211
            L HAHSIFSPWLMIVG IQIIYAA TS GQRNLKKRIAYSSVSHM         ITDTG
Sbjct: 268 LLPHAHSIFSPWLMIVGAIQIIYAASTSSGQRNLKKRIAYSSVSHMGFIIIGIGSITDTG 327

Query: 210 LNGAILQMISHGFIGAALFFLAGTSYDRICLVYLEEMGGIAIPIPKIFTXXXXXXXXXXX 31
           LNGAILQMISHGFIGAALFFLAGTSYDRI LVYL+EMGGIAIP+PKIFT           
Sbjct: 328 LNGAILQMISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

Query: 30  LPGMSGFVAE 1
           LPGMSGFVAE
Sbjct: 388 LPGMSGFVAE 397