BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038466
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522011.1| pentatricopeptide repeat-containing protein,...    77   2e-12
ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
emb|CBI23556.3| unnamed protein product [Vitis vinifera]               73   3e-11
ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    59   4e-07
ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07

>ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538815|gb|EEF40415.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 585

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/74 (54%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
 Frame = +2

Query: 98  PASPPHFKTHQKFSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIR 265
           P  PP    H     L  RLIN LK GHL  A   L++MTQ    PDL++YSL+LKSCIR
Sbjct: 28  PPPPPPSSAHSDSHSLNTRLINHLKAGHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIR 87

Query: 266 SFNFDRGKLVHSLL 307
           S NF +GKLVH+ L
Sbjct: 88  SNNFQKGKLVHNCL 101


>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
 Frame = +2

Query: 134 FSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIRSFNFDRGKLVHS 301
           F PLK+RLI +L +G L  AFSTL+LMTQ    PDL +YS++LKSCIR  NF  GKLVH 
Sbjct: 40  FEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHR 99

Query: 302 LLI 310
            L+
Sbjct: 100 KLM 102


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
 Frame = +2

Query: 134 FSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIRSFNFDRGKLVHS 301
           F PLK+RLI +L +G L  AFSTL+LMTQ    PDL +YS++LKSCIR  NF  GKLVH 
Sbjct: 9   FEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHR 68

Query: 302 LLI 310
            L+
Sbjct: 69  KLM 71


>ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
 Frame = +2

Query: 92  SIPASPPHFKTHQKFSPLKHRLINELKIGHLDSAFSTLNLM----TQPDLVSYSLVLKSC 259
           S P+S   F T    +PL  RLI E+  G L  A STL  M    + PDL +YSL LK C
Sbjct: 17  SNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKC 76

Query: 260 IRSFNFDRGKLVHSLL 307
           IR+ +FD G LVH  L
Sbjct: 77  IRTRSFDIGTLVHEKL 92


>ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
 Frame = +2

Query: 92  SIPASPPHFKTHQKFSPLKHRLINELKIGHLDSAFSTLNLM----TQPDLVSYSLVLKSC 259
           S P+S   F T    +PL  RLI E+  G L  A STL  M    + PDL +YSL LK C
Sbjct: 17  SNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKC 76

Query: 260 IRSFNFDRGKLVHSLL 307
           IR+ +FD G LVH  L
Sbjct: 77  IRTRSFDIGTLVHEKL 92