BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038312
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   143   1e-32
ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   142   3e-32
ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp....   133   2e-29
ref|NP_188076.1| pentatricopeptide repeat-containing protein [Ar...   133   2e-29

>ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  144 bits (362), Expect = 1e-32
 Identities = 70/138 (50%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
 Frame = -1

Query: 405 IYPVLIDRRII--TRSNCTVSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDY 232
           I+P LI +     T     + RL+HKDWL+P EVL+IF  L + ESV+ VL+  S+RKD+
Sbjct: 22  IHPTLIQKSTFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVSKRKDF 81

Query: 231 NPSEALYTVVVQKLSRGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRA 55
            P+EALYT+V+ KL++ + +DAI+DV+K +K +K C LSD FFY VI++YGN AG  DRA
Sbjct: 82  KPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGQPDRA 141

Query: 54  TEMLFSMREYNCWPTIRT 1
            E LF M +++CWP+++T
Sbjct: 142 VETLFDMPKFHCWPSVKT 159


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  143 bits (361), Expect = 1e-32
 Identities = 70/138 (50%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
 Frame = -1

Query: 405 IYPVLIDRRII--TRSNCTVSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDY 232
           I+P LI + I   T     + RL+HKDWL+P EVL+IF  L + ESV+ VL+   +RKD+
Sbjct: 22  IHPTLIQKSIFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVCKRKDF 81

Query: 231 NPSEALYTVVVQKLSRGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRA 55
            P+EALYT+V+ KL++ + +DAI+DV+K +K +K C LSD FFY VI++YGN AG  DRA
Sbjct: 82  KPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGRPDRA 141

Query: 54  TEMLFSMREYNCWPTIRT 1
            E LF M +++CWP+++T
Sbjct: 142 VETLFDMPKFHCWPSVKT 159


>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score =  142 bits (358), Expect = 3e-32
 Identities = 64/118 (54%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
 Frame = -1

Query: 348 RLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKKYD 169
           +L HKDWL+PNEV++IF+ L D  S+I+V  +YS+RKDY P+EALYT V+ KL++ K +D
Sbjct: 1   KLTHKDWLSPNEVIKIFENLKDPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFD 60

Query: 168 AIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSM-REYNCWPTIRT 1
           AI+D++++IK +K+C LS+DFF+ VI+IYG  AG I +A E LF M + YNCWP +++
Sbjct: 61  AIEDIMQKIKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKS 118


>ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328724|gb|EFH59143.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score =  133 bits (334), Expect = 2e-29
 Identities = 58/119 (48%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
 Frame = -1

Query: 354 VSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKK 175
           ++RL HKDWLAPNEVL+IF+ + D   ++   + YS+RKDY P+E+LY +++ K  + K 
Sbjct: 51  LARLKHKDWLAPNEVLKIFENVKDPSFLMPAYQHYSKRKDYQPTESLYALLINKFGQAKM 110

Query: 174 YDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSMREYNCWPTIRT 1
           +D I++V+  IK EK C  S+DFFY ++RIYGN AG I+RA E+LF M ++ CWP+ ++
Sbjct: 111 FDEIEEVMSTIKLEKRCRFSEDFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSAKS 169


>ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g14580, mitochondrial; Flags: Precursor
           gi|9294380|dbj|BAB02390.1| unnamed protein product
           [Arabidopsis thaliana] gi|119935972|gb|ABM06049.1|
           At3g14580 [Arabidopsis thaliana]
           gi|332642020|gb|AEE75541.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 405

 Score =  133 bits (334), Expect = 2e-29
 Identities = 58/119 (48%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
 Frame = -1

Query: 354 VSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKK 175
           ++RL HKDWLAPNEVL+IF  + D   ++   + YS+RKDY P+E+LY +++ K  + K 
Sbjct: 51  LARLRHKDWLAPNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKM 110

Query: 174 YDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSMREYNCWPTIRT 1
           YD I++V++ IK EK C  S++FFY ++RIYGN AG I+RA E+LF M ++ CWP+ ++
Sbjct: 111 YDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKS 169