BLASTX nr result
ID: Coptis25_contig00038312
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00038312 (528 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32 emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera] 143 1e-32 ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2... 142 3e-32 ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp.... 133 2e-29 ref|NP_188076.1| pentatricopeptide repeat-containing protein [Ar... 133 2e-29 >ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial-like [Vitis vinifera] Length = 393 Score = 144 bits (362), Expect = 1e-32 Identities = 70/138 (50%), Positives = 100/138 (72%), Gaps = 3/138 (2%) Frame = -1 Query: 405 IYPVLIDRRII--TRSNCTVSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDY 232 I+P LI + T + RL+HKDWL+P EVL+IF L + ESV+ VL+ S+RKD+ Sbjct: 22 IHPTLIQKSTFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVSKRKDF 81 Query: 231 NPSEALYTVVVQKLSRGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRA 55 P+EALYT+V+ KL++ + +DAI+DV+K +K +K C LSD FFY VI++YGN AG DRA Sbjct: 82 KPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGQPDRA 141 Query: 54 TEMLFSMREYNCWPTIRT 1 E LF M +++CWP+++T Sbjct: 142 VETLFDMPKFHCWPSVKT 159 >emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera] Length = 393 Score = 143 bits (361), Expect = 1e-32 Identities = 70/138 (50%), Positives = 100/138 (72%), Gaps = 3/138 (2%) Frame = -1 Query: 405 IYPVLIDRRII--TRSNCTVSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDY 232 I+P LI + I T + RL+HKDWL+P EVL+IF L + ESV+ VL+ +RKD+ Sbjct: 22 IHPTLIQKSIFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVCKRKDF 81 Query: 231 NPSEALYTVVVQKLSRGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRA 55 P+EALYT+V+ KL++ + +DAI+DV+K +K +K C LSD FFY VI++YGN AG DRA Sbjct: 82 KPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGRPDRA 141 Query: 54 TEMLFSMREYNCWPTIRT 1 E LF M +++CWP+++T Sbjct: 142 VETLFDMPKFHCWPSVKT 159 >ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa] Length = 326 Score = 142 bits (358), Expect = 3e-32 Identities = 64/118 (54%), Positives = 93/118 (78%), Gaps = 2/118 (1%) Frame = -1 Query: 348 RLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKKYD 169 +L HKDWL+PNEV++IF+ L D S+I+V +YS+RKDY P+EALYT V+ KL++ K +D Sbjct: 1 KLTHKDWLSPNEVIKIFENLKDPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFD 60 Query: 168 AIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSM-REYNCWPTIRT 1 AI+D++++IK +K+C LS+DFF+ VI+IYG AG I +A E LF M + YNCWP +++ Sbjct: 61 AIEDIMQKIKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKS 118 >ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 409 Score = 133 bits (334), Expect = 2e-29 Identities = 58/119 (48%), Positives = 87/119 (73%), Gaps = 1/119 (0%) Frame = -1 Query: 354 VSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKK 175 ++RL HKDWLAPNEVL+IF+ + D ++ + YS+RKDY P+E+LY +++ K + K Sbjct: 51 LARLKHKDWLAPNEVLKIFENVKDPSFLMPAYQHYSKRKDYQPTESLYALLINKFGQAKM 110 Query: 174 YDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSMREYNCWPTIRT 1 +D I++V+ IK EK C S+DFFY ++RIYGN AG I+RA E+LF M ++ CWP+ ++ Sbjct: 111 FDEIEEVMSTIKLEKRCRFSEDFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSAKS 169 >ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14580, mitochondrial; Flags: Precursor gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana] gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana] gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 405 Score = 133 bits (334), Expect = 2e-29 Identities = 58/119 (48%), Positives = 87/119 (73%), Gaps = 1/119 (0%) Frame = -1 Query: 354 VSRLNHKDWLAPNEVLEIFKRLSDSESVINVLEKYSQRKDYNPSEALYTVVVQKLSRGKK 175 ++RL HKDWLAPNEVL+IF + D ++ + YS+RKDY P+E+LY +++ K + K Sbjct: 51 LARLRHKDWLAPNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKM 110 Query: 174 YDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYIDRATEMLFSMREYNCWPTIRT 1 YD I++V++ IK EK C S++FFY ++RIYGN AG I+RA E+LF M ++ CWP+ ++ Sbjct: 111 YDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKS 169