BLASTX nr result
ID: Coptis25_contig00038292
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00038292
(639 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat... 317 2e-84
emb|CBI30291.3| unnamed protein product [Vitis vinifera] 317 2e-84
emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera] 311 5e-83
ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containi... 302 3e-80
ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containi... 283 1e-74
>ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 317 bits (811), Expect = 2e-84
Identities = 149/199 (74%), Positives = 170/199 (85%)
Frame = +1
Query: 1 SYLGACRTYGDKERGELAAEKLMALEPENSGTHVLLSNIYASAGQWEGVRSMRKMMRDGK 180
S+LGACR +GDKE G+LAAEKL+ LEP+NSG VLLSNIYA+ QWE VRS+R MRDG
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542
Query: 181 VTKLPGYSWVDVGNKTHAFGAEDYSHPQIREIYEKLENLLDQIRKAGYVPQTESIPFDME 360
V KLPGYSWVDVG KTH FGAED+SHP+ IYEKL+ LLDQI+ AGYVP+T+S+P DM+
Sbjct: 543 VKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMD 602
Query: 361 EAQKERALHHHSEKIAIAFALISMPAGKPIIVKKNLRVCADCHSAIKLISKVVGRKIIVR 540
++ KE+ LH HSE+IA+AFALISMP GKPIIVKKNLRVC DCHSAIK ISKV GRKIIVR
Sbjct: 603 DSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVR 662
Query: 541 DNSRFHHFGDGLCSCGDFW 597
DNSRFHHF DG CSCGD+W
Sbjct: 663 DNSRFHHFTDGSCSCGDYW 681
>emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 317 bits (811), Expect = 2e-84
Identities = 149/199 (74%), Positives = 170/199 (85%)
Frame = +1
Query: 1 SYLGACRTYGDKERGELAAEKLMALEPENSGTHVLLSNIYASAGQWEGVRSMRKMMRDGK 180
S+LGACR +GDKE G+LAAEKL+ LEP+NSG VLLSNIYA+ QWE VRS+R MRDG
Sbjct: 418 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 477
Query: 181 VTKLPGYSWVDVGNKTHAFGAEDYSHPQIREIYEKLENLLDQIRKAGYVPQTESIPFDME 360
V KLPGYSWVDVG KTH FGAED+SHP+ IYEKL+ LLDQI+ AGYVP+T+S+P DM+
Sbjct: 478 VKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMD 537
Query: 361 EAQKERALHHHSEKIAIAFALISMPAGKPIIVKKNLRVCADCHSAIKLISKVVGRKIIVR 540
++ KE+ LH HSE+IA+AFALISMP GKPIIVKKNLRVC DCHSAIK ISKV GRKIIVR
Sbjct: 538 DSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVR 597
Query: 541 DNSRFHHFGDGLCSCGDFW 597
DNSRFHHF DG CSCGD+W
Sbjct: 598 DNSRFHHFTDGSCSCGDYW 616
>emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 311 bits (798), Expect = 5e-83
Identities = 148/199 (74%), Positives = 167/199 (83%)
Frame = +1
Query: 1 SYLGACRTYGDKERGELAAEKLMALEPENSGTHVLLSNIYASAGQWEGVRSMRKMMRDGK 180
S+LGACR +GDKE G+LAAEKL+ LEP+NSG VLLSNIYA+ QWE VRS+R MRDG
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542
Query: 181 VTKLPGYSWVDVGNKTHAFGAEDYSHPQIREIYEKLENLLDQIRKAGYVPQTESIPFDME 360
V KLPGYSWVDVG KTH FGAED+SH + IYEKL+ LLDQI+ AGYVP T+S+P DM+
Sbjct: 543 VKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMD 602
Query: 361 EAQKERALHHHSEKIAIAFALISMPAGKPIIVKKNLRVCADCHSAIKLISKVVGRKIIVR 540
+ KE+ LH HSE+IA+AFALISMP GKPIIVKKNLRVC DCHSAIK ISKV GRKIIVR
Sbjct: 603 DXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVR 662
Query: 541 DNSRFHHFGDGLCSCGDFW 597
DNSRFHHF DG CSCGD+W
Sbjct: 663 DNSRFHHFTDGSCSCGDYW 681
>ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 751
Score = 302 bits (774), Expect = 3e-80
Identities = 137/199 (68%), Positives = 167/199 (83%)
Frame = +1
Query: 1 SYLGACRTYGDKERGELAAEKLMALEPENSGTHVLLSNIYASAGQWEGVRSMRKMMRDGK 180
S+LGAC+ +GD ER + AA+KLM LEPENSG HVLLSNIYA QWE V+S+RKM++DG
Sbjct: 553 SFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGN 612
Query: 181 VTKLPGYSWVDVGNKTHAFGAEDYSHPQIREIYEKLENLLDQIRKAGYVPQTESIPFDME 360
+ KLPGYSWVD+ NKTH FG ED+SHPQ +EIYEKL+NLLDQI++ GYVPQTES+ DM+
Sbjct: 613 MNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMD 672
Query: 361 EAQKERALHHHSEKIAIAFALISMPAGKPIIVKKNLRVCADCHSAIKLISKVVGRKIIVR 540
+ KE+ LH+HSE+IA+AF+L++ P G PIIVKKNLRVC+DCHSA+K ISKV R IIVR
Sbjct: 673 DNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVR 732
Query: 541 DNSRFHHFGDGLCSCGDFW 597
D SRFHHF +G CSCGD+W
Sbjct: 733 DISRFHHFSNGSCSCGDYW 751
>ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like
[Brachypodium distachyon]
Length = 695
Score = 283 bits (725), Expect = 1e-74
Identities = 130/199 (65%), Positives = 161/199 (80%)
Frame = +1
Query: 1 SYLGACRTYGDKERGELAAEKLMALEPENSGTHVLLSNIYASAGQWEGVRSMRKMMRDGK 180
S LGACR G+KE GE+AA+ +M LEP+N+G HV LS IYAS GQWE V+++RK+MRD +
Sbjct: 497 SLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNR 556
Query: 181 VTKLPGYSWVDVGNKTHAFGAEDYSHPQIREIYEKLENLLDQIRKAGYVPQTESIPFDME 360
+ KLPG+SWVD KTH FG+ED+SHPQ +IYEKLE L ++I++ GYVP T +P ++E
Sbjct: 557 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLE 616
Query: 361 EAQKERALHHHSEKIAIAFALISMPAGKPIIVKKNLRVCADCHSAIKLISKVVGRKIIVR 540
+ K+R L +HSE+IA+AFALISMPA KPIIVKKNLR+CADCHSA+K ISKV R IIVR
Sbjct: 617 DTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVR 676
Query: 541 DNSRFHHFGDGLCSCGDFW 597
DNSRFHHF G CSCGD+W
Sbjct: 677 DNSRFHHFVKGGCSCGDYW 695