BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038281
         (750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               85   5e-39
emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]    94   2e-38
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]    96   2e-37
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...    90   1e-36
emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]    91   1e-35

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 85.1 bits (209), Expect(3) = 5e-39
 Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
 Frame = -1

Query: 321  TTIRTXXXXXXXXXXXLRQLDVKNVFLHGFLMIQ-YI*VTPDFVDPARPDHVCRLHKAIY 145
            +TIR            +RQLDV+NVFLHG+L    Y+     FVDP  P HVC+L +++Y
Sbjct: 962  STIRLVLALAVSHRWPIRQLDVQNVFLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLY 1021

Query: 144  GLKQAPRAWFQRLSTFLLHFGFT*SSADMSMF 49
            GLKQAPRAWF+  S +L   GF  S AD SMF
Sbjct: 1022 GLKQAPRAWFRCFSDYLEELGFLESRADYSMF 1053



 Score = 81.6 bits (200), Expect(3) = 5e-39
 Identities = 37/54 (68%), Positives = 45/54 (83%)
 Frame = -2

Query: 491  PPEINIYIVPNKWVFKLKLKSDGSIERPKARLVAKGFHQQAGINYGETFSPVVK 330
            PP   + I+PNKWVF++K +SDGS+ER KARLVA GFHQQ G++Y ETFSPVVK
Sbjct: 907  PPSSLMNILPNKWVFRIKKRSDGSVERYKARLVANGFHQQEGLDYTETFSPVVK 960



 Score = 41.6 bits (96), Expect(3) = 5e-39
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = -3

Query: 694  RHRGDIHRPKVRTNGTIRYPFP-HVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDDRSSE 518
            ++ GDI     R+   I  P P + + + L +  +EPTCY+QA ++PEWR+AM  +  + 
Sbjct: 841  QNHGDI---VTRSKHGISKPNPKYAMHSTLLALPLEPTCYTQAAKYPEWREAMDHEFKAL 897

Query: 517  EQ 512
            +Q
Sbjct: 898  QQ 899


>emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]
          Length = 1044

 Score = 94.0 bits (232), Expect(3) = 2e-38
 Identities = 50/96 (52%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
 Frame = -1

Query: 324 PTTIRTXXXXXXXXXXXLRQLDVKNVFLHGFLM-IQYI*VTPDFVDPARPDHVCRLHKAI 148
           P TIRT           L+Q+DV N FLHG L    Y+   P F D +RPD+VCRL KAI
Sbjct: 609 PATIRTMLSIAIMNGWPLKQMDVNNAFLHGNLTETVYMMQPPGFKDLSRPDYVCRLRKAI 668

Query: 147 YGLKQAPRAWFQRLSTFLLHFGFT*SSADMSMFIHH 40
           YGLKQ PRAW+  L T LL  GF  S AD S+F++H
Sbjct: 669 YGLKQGPRAWYSALKTALLALGFQNSKADSSLFVYH 704



 Score = 74.3 bits (181), Expect(3) = 2e-38
 Identities = 34/54 (62%), Positives = 44/54 (81%)
 Frame = -2

Query: 491 PPEINIYIVPNKWVFKLKLKSDGSIERPKARLVAKGFHQQAGINYGETFSPVVK 330
           PP IN + V  KWVF++K K DGS+++ KARLVAKG++QQ G++Y ETFSPVVK
Sbjct: 555 PPPINCHPVGCKWVFRVKRKVDGSVDKFKARLVAKGYNQQPGVDYNETFSPVVK 608



 Score = 37.7 bits (86), Expect(3) = 2e-38
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 709 HIMFTRHRGDIHRPKVRTNGTIRYPFPHVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDD 530
           H M TR   +I +PK            H ++       +EPTC +QAV  PEW +AM+ +
Sbjct: 492 HSMTTRSMNNIFKPKQL----------HTVSKHYLPLPLEPTCVTQAVSHPEWXEAMSSE 541


>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
          Length = 1427

 Score = 95.9 bits (237), Expect(3) = 2e-37
 Identities = 53/95 (55%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -1

Query: 324  PTTIRTXXXXXXXXXXXLRQLDVKNVFLHGFLMIQ-YI*VTPDFVDPARPDHVCRLHKAI 148
            PTTIR            + QLDV N FLHG L    Y+   P +VD A P HVCRL KA+
Sbjct: 984  PTTIRVVLSIALSNXWXISQLDVNNXFLHGTLTEDVYMAQPPGYVDQANPTHVCRLQKAL 1043

Query: 147  YGLKQAPRAWFQRLSTFLLHFGFT*SSADMSMFIH 43
            YGLKQAPRAW+  L TFLL FGF  S  D S+FI+
Sbjct: 1044 YGLKQAPRAWYMELRTFLLTFGFINSKXDTSLFIY 1078



 Score = 72.8 bits (177), Expect(3) = 2e-37
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = -2

Query: 491  PPEINIYIVPNKWVFKLKLKSDGSIERPKARLVAKGFHQQAGINYGETFSPVVK 330
            PP  N  IV  KWVF++K   DGSI R KARLVAKGFHQ+ G++Y +TFSPVVK
Sbjct: 930  PPPSNHNIVGCKWVFRIKRNPDGSISRYKARLVAKGFHQRPGVDYHDTFSPVVK 983



 Score = 33.9 bits (76), Expect(3) = 2e-37
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -3

Query: 724  VPSMGHIMFTRHRGDIHRPKVRTNGTIRYPFPHVLAAQLTSSTVEPTCYSQAVRFPEWRK 545
            +P   H + TR + +IH PK   +    +   HV    L  S +EPT  SQA++ P+W  
Sbjct: 856  LPEPSHRIVTRSQNNIHCPKQFPDFKTSF---HVTKHPLPXS-LEPTTASQALKDPKWCA 911

Query: 544  AMTDD 530
             M D+
Sbjct: 912  XMDDE 916


>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
            gi|225898008|dbj|BAH30336.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 1459

 Score = 90.1 bits (222), Expect(3) = 1e-36
 Identities = 50/94 (53%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = -1

Query: 321  TTIRTXXXXXXXXXXXLRQLDVKNVFLHGFLMIQ-YI*VTPDFVDPARPDHVCRLHKAIY 145
            TTIR            L+QLDV N FL G L  + Y+   P FVD  RP HVCRL KAIY
Sbjct: 1038 TTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKAIY 1097

Query: 144  GLKQAPRAWFQRLSTFLLHFGFT*SSADMSMFIH 43
            GLKQAPRAW+  L   LL+ GF  S AD S+FI+
Sbjct: 1098 GLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIY 1131



 Score = 67.4 bits (163), Expect(3) = 1e-36
 Identities = 31/58 (53%), Positives = 42/58 (72%)
 Frame = -2

Query: 491  PPEINIYIVPNKWVFKLKLKSDGSIERPKARLVAKGFHQQAGINYGETFSPVVKCNPL 318
            PP    ++V  +WVFKLK   +G I++ KARLVAKGF+QQ G++Y ETFSPV+K   +
Sbjct: 983  PPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVIKATTI 1040



 Score = 42.4 bits (98), Expect(3) = 1e-36
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = -3

Query: 736  SRVWVPSMGHIMFTRHRGDIHRPKVRTNGTIRYPFPHVLAAQLTSSTVEPTCYSQAVRFP 557
            SR   P   H M TR + +I +PK +T+ T+    PH+          EP   +QA++  
Sbjct: 910  SRSQPPKNNHQMKTRSKNNITKPKTKTSLTVALTQPHL---------SEPNTVTQALKDK 960

Query: 556  EWRKAMTDDRSSEEQD 509
            +WR AM+D+  +++++
Sbjct: 961  KWRFAMSDEFDAQQRN 976


>emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]
          Length = 1312

 Score = 90.5 bits (223), Expect(3) = 1e-35
 Identities = 49/96 (51%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
 Frame = -1

Query: 324  PTTIRTXXXXXXXXXXXLRQLDVKNVFLHGFLMIQ-YI*VTPDFVDPARPDHVCRLHKAI 148
            P TIR            ++QLDV N FL+G L  Q ++   P F D + P HVCRL KA+
Sbjct: 886  PCTIRLVLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDNSCPTHVCRLQKAL 945

Query: 147  YGLKQAPRAWFQRLSTFLLHFGFT*SSADMSMFIHH 40
            YGLKQAPRAWF +LS+FLL  GF  S AD S+F  H
Sbjct: 946  YGLKQAPRAWFHKLSSFLLQIGFQCSRADASLFYFH 981



 Score = 72.4 bits (176), Expect(3) = 1e-35
 Identities = 36/54 (66%), Positives = 42/54 (77%)
 Frame = -2

Query: 491 PPEINIYIVPNKWVFKLKLKSDGSIERPKARLVAKGFHQQAGINYGETFSPVVK 330
           PP  N  I+  KWVFKLK K +GSI+R KARLVA+GFHQ  GI++ ETFSPVVK
Sbjct: 832 PPPSNAKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVK 885



 Score = 33.9 bits (76), Expect(3) = 1e-35
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = -3

Query: 721 PSMGHIMFTRHRGDIHRPKVRTNGTIRYPFPHVLAAQLTSSTVEPTCYSQAVRFPEWRKA 542
           P  GH M TR +  I + K                  LTS T+EP    QA++ P W+ A
Sbjct: 771 PIPGHPMITRSKSGICKKKT----------------YLTSLTIEPRTVKQALQDPNWKVA 814

Query: 541 MTDDRSS--EEQDMNSCPSPQRSTYI 470
           M  +  +  + Q  +  P P  +  I
Sbjct: 815 MEQEYQALLKNQTWSLVPPPSNAKII 840