BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038234
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containi...   156   1e-36
ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002525566.1| pentatricopeptide repeat-containing protein,...   141   6e-32

>ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  156 bits (395), Expect = 1e-36
 Identities = 75/92 (81%), Positives = 80/92 (86%)
 Frame = +3

Query: 9   HFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYA 188
           +F KMQ +N+K DSFTMVSVI ALA+LSVL QAKWIHGL IR+CLDKN FV TALVDMYA
Sbjct: 465 YFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYA 524

Query: 189 KCGGVHIARKLFDMMDVRHVMTWNAMIDGYGT 284
           KCG VH ARKLFDMMD RHV TWNAMIDGYGT
Sbjct: 525 KCGAVHTARKLFDMMDERHVTTWNAMIDGYGT 556



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/87 (48%), Positives = 60/87 (68%)
 Frame = +3

Query: 18  KMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAKCG 197
           +MQ E  + DS T+VS++ A+AD+  LR  + IHG ++R+  +    V TALVDMY+KCG
Sbjct: 266 RMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCG 325

Query: 198 GVHIARKLFDMMDVRHVMTWNAMIDGY 278
            V  AR +FD M  + V++WN+MIDGY
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGY 352



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/89 (35%), Positives = 54/89 (60%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F KM  E V+  + T++  + A ADL  + Q +++H L  +  L  +  VM +L+ MY+K
Sbjct: 365 FQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSK 424

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V IA ++F+ +  + +++WNAMI GY
Sbjct: 425 CKRVDIAAEIFENLQHKTLVSWNAMILGY 453



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/89 (35%), Positives = 48/89 (53%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F +M+ + V+   +    ++    D + LR+ K IH   I +    N F MT +V+MYAK
Sbjct: 163 FCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAK 222

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V  A K+FD M  R ++ WN +I GY
Sbjct: 223 CRLVEEAYKMFDRMPERDLVCWNTIISGY 251


>ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1|
           predicted protein [Populus trichocarpa]
          Length = 704

 Score =  150 bits (380), Expect = 8e-35
 Identities = 72/94 (76%), Positives = 79/94 (84%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  F +MQ  N+K DSFTMVSVI ALA+LS+ RQAKWIHGL IR  LDKN FVMTALVDM
Sbjct: 318 LNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDM 377

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGYGT 284
           YAKCG +H ARKLFDMM+ RHV+TWNAMIDGYGT
Sbjct: 378 YAKCGAIHTARKLFDMMNARHVITWNAMIDGYGT 411



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 43/87 (49%), Positives = 59/87 (67%)
 Frame = +3

Query: 18  KMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAKCG 197
           +M  E  + DS T+VS++ A+AD  +LR    +HG  +R+  +    V TALVDMY+KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 198 GVHIARKLFDMMDVRHVMTWNAMIDGY 278
            V IAR +FD MD R V++WN+MIDGY
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGY 207



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/92 (38%), Positives = 52/92 (56%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  FS+M+ ++V+   +    ++    D S L++ K IHG  I S    N F MT +V+M
Sbjct: 15  LSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNM 74

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           YAKC  ++ A  +FD M  R ++ WN MI GY
Sbjct: 75  YAKCRQINDAYNMFDRMPERDLVCWNTMISGY 106



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/89 (38%), Positives = 53/89 (59%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F KM  E V+  + T++  + A ADL  L + K++H L  +  LD +  VM +L+ MY+K
Sbjct: 220 FQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSK 279

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V IA  +F  +  + +++WNAMI GY
Sbjct: 280 CKRVDIAADIFKNLRNKTLVSWNAMILGY 308


>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  145 bits (366), Expect = 3e-33
 Identities = 70/94 (74%), Positives = 79/94 (84%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  FS+M+   +K DSFTMVSVI ALA+LSV R AKWIHGL IRSCLDKN FV TALVDM
Sbjct: 435 LNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDM 494

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGYGT 284
           Y+KCG +H+ARKLFDM+  RHV+TWNAMIDGYGT
Sbjct: 495 YSKCGAIHMARKLFDMISDRHVITWNAMIDGYGT 528



 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = +3

Query: 18  KMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAKCG 197
           +MQ E  + DS T+V+V+ A AD+ +L   K IHG  IR+   K   + TAL DMY+KCG
Sbjct: 238 RMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG 297

Query: 198 GVHIARKLFDMMDVRHVMTWNAMIDGY 278
            V  AR +FD MD + V++WN+M+DGY
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGY 324



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/92 (33%), Positives = 51/92 (55%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L    +M+ ++VK   +    ++    D + L++ K IHG  I +    N F MT +V+M
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           YAKC  +  A K+FD M  R +++WN +I G+
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F KM  E +     T++  + A ADL  L + K++H    +  L  +  VM +L+ MY+K
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSK 396

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V IA  +F+ ++ R  ++WNAMI GY
Sbjct: 397 CKRVDIASDIFNNLNGRTHVSWNAMILGY 425


>ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  145 bits (366), Expect = 3e-33
 Identities = 70/94 (74%), Positives = 79/94 (84%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  FS+M+   +K DSFTMVSVI ALA+LSV R AKWIHGL IRSCLDKN FV TALVDM
Sbjct: 435 LNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDM 494

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGYGT 284
           Y+KCG +H+ARKLFDM+  RHV+TWNAMIDGYGT
Sbjct: 495 YSKCGAIHMARKLFDMISDRHVITWNAMIDGYGT 528



 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = +3

Query: 18  KMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAKCG 197
           +MQ E  + DS T+V+V+ A AD+ +L   K IHG  IR+   K   + TAL DMY+KCG
Sbjct: 238 RMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG 297

Query: 198 GVHIARKLFDMMDVRHVMTWNAMIDGY 278
            V  AR +FD MD + V++WN+M+DGY
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGY 324



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/92 (33%), Positives = 51/92 (55%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L    +M+ ++VK   +    ++    D + L++ K IHG  I +    N F MT +V+M
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           YAKC  +  A K+FD M  R +++WN +I G+
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F KM  E +     T++  + A ADL  L + K++H    +  L  +  VM +L+ MY+K
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSK 396

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V IA  +F+ ++ R  ++WNAMI GY
Sbjct: 397 CKRVDIASDIFNNLNGRTHVSWNAMILGY 425


>ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535145|gb|EEF36825.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 563

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/94 (71%), Positives = 76/94 (80%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  F +MQ +N+K DSFTMVSVI ALA+LS+ RQAKWIHGL IR  LD   FVMTALVDM
Sbjct: 430 LNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDM 489

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGYGT 284
           YAKCG +H ARKLF+MM  RHV+TWN+MID YGT
Sbjct: 490 YAKCGAIHTARKLFNMMSERHVITWNSMIDAYGT 523



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 41/86 (47%), Positives = 54/86 (62%)
 Frame = +3

Query: 18  KMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAKCG 197
           K+  E  + DS T+VSV+ A+AD+  LR  K IH   IR+  D    + TALVDMY+KC 
Sbjct: 233 KIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCD 292

Query: 198 GVHIARKLFDMMDVRHVMTWNAMIDG 275
            +  AR +FD M  R V+TWN+MI G
Sbjct: 293 SLGTARVIFDGMGSRTVVTWNSMIAG 318



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/89 (40%), Positives = 51/89 (57%)
 Frame = +3

Query: 12  FSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDMYAK 191
           F KM  E ++    T++ V+ A AD   L Q K++H L     LD N  VM +L+ MY+K
Sbjct: 332 FKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSK 391

Query: 192 CGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           C  V  A  LF+ +  R +++WNAMI GY
Sbjct: 392 CKQVDFAANLFENLQNRTLVSWNAMILGY 420



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/92 (36%), Positives = 50/92 (54%)
 Frame = +3

Query: 3   LRHFSKMQRENVKTDSFTMVSVISALADLSVLRQAKWIHGLTIRSCLDKNAFVMTALVDM 182
           L  F +M+ +NV+   +    +++   D   LR+ K IHG  I S    N F MTA+V +
Sbjct: 127 LLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAVVSL 186

Query: 183 YAKCGGVHIARKLFDMMDVRHVMTWNAMIDGY 278
           Y KC  +  A K+FD M  R ++ WN +I GY
Sbjct: 187 YCKCRVIGDAYKMFDRMTERDLVCWNTIISGY 218