BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038203
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    76   2e-12
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    73   2e-11
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    71   1e-10
ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group] g...    70   1e-10
gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japo...    70   1e-10

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +1

Query: 1    VKPRAKGAPKIKTCIWIPPEPDVIKLNTDGAASGNPGPAGIGVSYRGNMGDFKLTMWKSI 180
            V PR +    I   +W  P P ++K+NTDG+  G  G A  G  +R + G F      +I
Sbjct: 1000 VSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNI 1057

Query: 181  GTATSFWAECLAIIEGVETAISRGWLRLWVETDSEAASKAFTGGN-VPWQLQARWTN 348
            G A+ F AE LA I  +E A   GW  LW+E+DS +A   F+  + V W L+ RW N
Sbjct: 1058 GLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHN 1114


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +1

Query: 43  IWIPPEPDVIKLNTDGAASGNPGPAGIGVSYRGNMGDFKLTMWKSIGTATSFWAECLAII 222
           IW+PP    +K+N DG+  G+P    IGV +R +   F     ++IG AT+  AE  A +
Sbjct: 244 IWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACM 303

Query: 223 EGVETAISRGWLRLWVETDSEAASKAF-TGGNVPWQLQARWTNC 351
             +E A       +W+ETDS    +AF     VPW++  RW NC
Sbjct: 304 FAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNC 347


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/86 (41%), Positives = 49/86 (56%)
 Frame = +1

Query: 25  PKIKTCIWIPPEPDVIKLNTDGAASGNPGPAGIGVSYRGNMGDFKLTMWKSIGTATSFWA 204
           PKI T  W PP P  IKLN++GA  G PG  G+G  +R   G  K      + T  +F A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 205 ECLAIIEGVETAISRGWLRLWVETDS 282
           E  A I G++ A + GW ++W+E+DS
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDS 87


>ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group]
           gi|52076651|dbj|BAD45551.1| hypothetical protein [Oryza
           sativa Japonica Group] gi|255677331|dbj|BAH93688.1|
           Os06g0683500 [Oryza sativa Japonica Group]
          Length = 240

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/82 (46%), Positives = 49/82 (59%)
 Frame = +1

Query: 43  IWIPPEPDVIKLNTDGAASGNPGPAGIGVSYRGNMGDFKLTMWKSIGTATSFWAECLAII 222
           IW  PE   +KLN DG++  + G A IG  YR + G F L   + IGTATS  AE  A+ 
Sbjct: 78  IWRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALR 137

Query: 223 EGVETAISRGWLRLWVETDSEA 288
            G+E A+  GW R+W E DS+A
Sbjct: 138 RGLELAVRNGWRRVWAEGDSKA 159


>gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japonica Group]
          Length = 192

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/82 (46%), Positives = 49/82 (59%)
 Frame = +1

Query: 43  IWIPPEPDVIKLNTDGAASGNPGPAGIGVSYRGNMGDFKLTMWKSIGTATSFWAECLAII 222
           IW  PE   +KLN DG++  + G A IG  YR + G F L   + IGTATS  AE  A+ 
Sbjct: 44  IWRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALR 103

Query: 223 EGVETAISRGWLRLWVETDSEA 288
            G+E A+  GW R+W E DS+A
Sbjct: 104 RGLELAVRNGWRRVWAEGDSKA 125