BLASTX nr result
ID: Coptis25_contig00038175
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00038175
(795 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|2... 390 e-108
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,... 387 e-106
ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi... 380 e-105
ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containi... 381 e-103
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ... 367 2e-99
>ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|222867002|gb|EEF04133.1|
predicted protein [Populus trichocarpa]
Length = 709
Score = 390 bits (1003), Expect(2) = e-108
Identities = 185/247 (74%), Positives = 221/247 (89%)
Frame = -3
Query: 793 LVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQI 614
L+VS+FNVLLTAA +RGIWRWGVRLLNKMEEKGLKPGS+EWNAVLVACSKASET+AAVQI
Sbjct: 430 LIVSYFNVLLTAAKKRGIWRWGVRLLNKMEEKGLKPGSKEWNAVLVACSKASETAAAVQI 489
Query: 613 FSRMVEQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVG 434
F RMVEQGEKPT++SYGALLSALEKG+LYDEA+RVWEHM+KVGVKPN+YAYTI+AS++
Sbjct: 490 FRRMVEQGEKPTVISYGALLSALEKGRLYDEAVRVWEHMLKVGVKPNVYAYTIMASVFTR 549
Query: 433 QGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEIT 254
QG F +V+++I EMV +G+EPTVVTYNAIISGCA N + ++A+EWF R+K +NISPNEIT
Sbjct: 550 QGNFRLVDAIINEMVSTGIEPTVVTYNAIISGCARNNLSSAAYEWFHRMKVQNISPNEIT 609
Query: 253 YEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFGATIDVDTLGPRPL 74
Y+MLI AL + KP LAYE+YLRA NE L+LS KAYDAV++S++A+GATID LGPRP
Sbjct: 610 YDMLIEALAKSGKPRLAYELYLRAQNEDLQLSPKAYDAVMHSSEAYGATIDTSVLGPRPP 669
Query: 73 EKKKKTQ 53
+KKKK Q
Sbjct: 670 DKKKKVQ 676
Score = 28.9 bits (63), Expect(2) = e-108
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -1
Query: 39 LSEFCNLADLPRR 1
L+EFCNLAD+PRR
Sbjct: 681 LTEFCNLADVPRR 693
Score = 64.3 bits (155), Expect = 3e-08
Identities = 33/102 (32%), Positives = 56/102 (54%)
Frame = -3
Query: 583 PTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVGQGKFEMVESV 404
P + Y +LLSA+++ + Y+E ++ E M + GV PN+ Y IL IYV QG+ + V
Sbjct: 191 PNLFIYNSLLSAVKQSEQYEETEKILERMTQEGVAPNVVTYNILMVIYVKQGQAKKALDV 250
Query: 403 ITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGK 278
+ EM +G P+ +Y++ + G A ++F +K K
Sbjct: 251 LEEMRRNGFTPSAASYSSALLAYRKMEDGDGALKFFVEIKDK 292
Score = 62.8 bits (151), Expect = 8e-08
Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Frame = -3
Query: 727 VRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQIFSRMVEQGEKPTILSYGALLSA 548
++LL M++ L+PG ++ ++ AC++ A +++ R+ E+ ++ ++
Sbjct: 340 LKLLTDMDKAELQPGRSDYERLVWACTREEHYVVAKELYIRIRERCSDISLSVCNHVIWL 399
Query: 547 LEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIY-------VGQGKFEMVESVITEMV 389
+ K K + AL V+E ++ G KPN +Y ++ S + +G + ++ +M
Sbjct: 400 MGKAKKWWAALEVYEDLLDKGPKPNNLSYELIVSYFNVLLTAAKKRGIWRWGVRLLNKME 459
Query: 388 DSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEITYEMLILAL 230
+ G++P +NA++ C+ +A + F R+ + P I+Y L+ AL
Sbjct: 460 EKGLKPGSKEWNAVLVACSKASETAAAVQIFRRMVEQGEKPTVISYGALLSAL 512
>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 671
Score = 387 bits (993), Expect(2) = e-106
Identities = 181/247 (73%), Positives = 220/247 (89%)
Frame = -3
Query: 793 LVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQI 614
L+VSHFN+LLTAA +RGIWRWGVRLLNKME+KGLKPGSREWNAVLVACSKASET+AAVQI
Sbjct: 390 LIVSHFNILLTAARKRGIWRWGVRLLNKMEDKGLKPGSREWNAVLVACSKASETTAAVQI 449
Query: 613 FSRMVEQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVG 434
F RM+EQGEKPTI+SYGALLSALEKGKLYDEA+RVWEHM+KV VKPNLYAYTI+AS++ G
Sbjct: 450 FRRMIEQGEKPTIVSYGALLSALEKGKLYDEAVRVWEHMLKVDVKPNLYAYTIMASVFAG 509
Query: 433 QGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEIT 254
QGKF V+++I +MV SG+EPT++TYNAIISGC HN + ++A+EWF R+K +N+ PN+IT
Sbjct: 510 QGKFTYVDAIIQKMVSSGIEPTIITYNAIISGCTHNNLSSAAYEWFHRMKVQNMPPNKIT 569
Query: 253 YEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFGATIDVDTLGPRPL 74
YEMLI AL +D KP LAYE+YLRA EGL LS+K YDAV+ S++ +GATID++ LGPRP
Sbjct: 570 YEMLIEALAKDGKPRLAYELYLRAKYEGLDLSAKVYDAVLRSSQVYGATIDINVLGPRPP 629
Query: 73 EKKKKTQ 53
+KKK+ +
Sbjct: 630 DKKKRVK 636
Score = 26.9 bits (58), Expect(2) = e-106
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -1
Query: 39 LSEFCNLADLPRR 1
L+EFC+LAD+PRR
Sbjct: 641 LTEFCDLADVPRR 653
Score = 67.0 bits (162), Expect = 4e-09
Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Frame = -3
Query: 727 VRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQIFSRMVEQGEKPTILSYGALLSA 548
++LL M++ GL+P E+ ++ AC++ + +++ R+ E+ K ++ L+
Sbjct: 300 LKLLTDMDKAGLQPSQAEYERLVWACTREDHYAVGKELYIRIRERHSKISLSVCNHLIWL 359
Query: 547 LEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIY-------VGQGKFEMVESVITEMV 389
+ K K + AL ++E ++ G PN +Y ++ S + +G + ++ +M
Sbjct: 360 MGKAKKWWAALEIYEDLLDKGPNPNNMSYELIVSHFNILLTAARKRGIWRWGVRLLNKME 419
Query: 388 DSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEITYEMLILAL 230
D G++P +NA++ C+ T+A + F R+ + P ++Y L+ AL
Sbjct: 420 DKGLKPGSREWNAVLVACSKASETTAAVQIFRRMIEQGEKPTIVSYGALLSAL 472
Score = 65.5 bits (158), Expect = 1e-08
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = -3
Query: 649 SKASETSAAVQIFSRMVEQGEK--PTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKP 476
+K A V+ R E G P + Y +LLSA++K KL++EA ++ M + G+ P
Sbjct: 127 NKMESALALVEWLKRRKEIGSSIGPNLFIYNSLLSAVKKSKLFEEAEKILNDMTQEGIAP 186
Query: 475 NLYAYTILASIYVGQGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGM--GTSAFE 302
N+ Y L IYV +G+ +++ +M + G PT +Y+ + A+ GM G A
Sbjct: 187 NVVTYNTLMGIYVEKGQATKALNILEQMHEKGFIPTAASYSTAL--LAYRGMEDGHGALA 244
Query: 301 WFDRLKGK 278
+F +K K
Sbjct: 245 FFVDIKDK 252
>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
[Vitis vinifera]
Length = 763
Score = 380 bits (977), Expect(2) = e-105
Identities = 188/250 (75%), Positives = 215/250 (86%)
Frame = -3
Query: 793 LVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQI 614
LVVSHFN+LLTAA ++GIWRWGVRLLNKME+KGLKPGSREWNAVLVACSKA+ETSAAV+I
Sbjct: 482 LVVSHFNILLTAARKKGIWRWGVRLLNKMEDKGLKPGSREWNAVLVACSKAAETSAAVEI 541
Query: 613 FSRMVEQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVG 434
F RMVEQGEKPTI+SYGALLSALEKGKLYDEA RVWEHM+K+GV+PNLYAYTI+ASI VG
Sbjct: 542 FRRMVEQGEKPTIISYGALLSALEKGKLYDEASRVWEHMVKMGVEPNLYAYTIMASICVG 601
Query: 433 QGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEIT 254
QGK + V+S++ EM G++ TVVTYNAIISGCA NG+ ++AFEWF R+K I PNEIT
Sbjct: 602 QGKLQRVDSILREMETLGIDATVVTYNAIISGCARNGLSSAAFEWFHRMKVGKIQPNEIT 661
Query: 253 YEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFGATIDVDTLGPRPL 74
YEMLI AL +D KP LA+E+Y RA NEGL LS+KAYDAVV S++ ATIDV LGPRP
Sbjct: 662 YEMLIEALAKDGKPRLAFELYSRAQNEGLNLSTKAYDAVVLSSQVHSATIDVSLLGPRPP 721
Query: 73 EKKKKTQA*K 44
EKKKK A K
Sbjct: 722 EKKKKLLARK 731
Score = 27.7 bits (60), Expect(2) = e-105
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1
Query: 39 LSEFCNLADLPRR 1
LS FCNLAD+PRR
Sbjct: 733 LSAFCNLADVPRR 745
Score = 68.6 bits (166), Expect = 2e-09
Identities = 42/173 (24%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
Frame = -3
Query: 727 VRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQIFSRMVEQGEKPTILSYGALLSA 548
++LL M+ GL+PG E+ ++ AC++ A ++++R+ E+ + ++ ++
Sbjct: 392 LKLLADMDNAGLQPGRAEYERLVWACTREEHYVVAKELYTRIRERHTEISLSVCNHIIWL 451
Query: 547 LEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIY-------VGQGKFEMVESVITEMV 389
+ K K + AL ++E ++ G KPN +Y ++ S + +G + ++ +M
Sbjct: 452 MGKAKKWWAALEIYEDLLDKGPKPNNLSYELVVSHFNILLTAARKKGIWRWGVRLLNKME 511
Query: 388 DSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEITYEMLILAL 230
D G++P +NA++ C+ ++A E F R+ + P I+Y L+ AL
Sbjct: 512 DKGLKPGSREWNAVLVACSKAAETSAAVEIFRRMVEQGEKPTIISYGALLSAL 564
>ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610-like
[Glycine max]
Length = 808
Score = 381 bits (978), Expect = e-103
Identities = 185/247 (74%), Positives = 214/247 (86%)
Frame = -3
Query: 793 LVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQI 614
L+VSHFN LL+AA R+GIWRWGV+LLNKME+KGLKPG REWNAVLVACSKASET+AAVQI
Sbjct: 527 LIVSHFNFLLSAAKRKGIWRWGVKLLNKMEDKGLKPGCREWNAVLVACSKASETTAAVQI 586
Query: 613 FSRMVEQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVG 434
F RMVE GEKPTI+SYGALLSALEKGKLYD+ALRVW HMIKVGV+PN YAYTI+ASI+
Sbjct: 587 FKRMVENGEKPTIISYGALLSALEKGKLYDDALRVWNHMIKVGVEPNAYAYTIMASIHTA 646
Query: 433 QGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEIT 254
QG F V+++I EMV G+E TVVTYNAII+GCAHNGM + A+EWF R+K +NISPNEIT
Sbjct: 647 QGNFNRVDAIIQEMVTLGIEVTVVTYNAIITGCAHNGMSSVAYEWFHRMKVQNISPNEIT 706
Query: 253 YEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFGATIDVDTLGPRPL 74
YEMLI+AL D KP LAY++Y RA NEGL LSSKAYDAVV S++A ATI++ LGPRP+
Sbjct: 707 YEMLIVALANDGKPRLAYQLYTRAKNEGLTLSSKAYDAVVQSSQANNATIELGLLGPRPV 766
Query: 73 EKKKKTQ 53
+KKKK Q
Sbjct: 767 DKKKKVQ 773
Score = 57.4 bits (137), Expect = 4e-06
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -3
Query: 598 EQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVK------PNLYAYTILASIYV 437
++G+ P + + ++S K K D AL ++ M K ++ PNL+ Y L +
Sbjct: 242 DKGDLP-LQVFSTIISGFGKEKRMDSALILFNWMKKRKIETNGSFGPNLFIYNGLLGVVK 300
Query: 436 GQGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEI 257
G+F +E ++ EM + G+ VVTYN +++ G A + ++ ++P+ +
Sbjct: 301 QSGQFAEMEVILNEMAEDGIAYNVVTYNTLMAIYIEKGECDKALNMLEEIRRNGLTPSPV 360
Query: 256 TYEMLILALGR 224
+Y +LA R
Sbjct: 361 SYSQALLAYRR 371
>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297319497|gb|EFH49919.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 674
Score = 367 bits (941), Expect = 2e-99
Identities = 171/244 (70%), Positives = 211/244 (86%)
Frame = -3
Query: 793 LVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQI 614
LVVSHFN+LL+AASRRGIWRWGVRLLNKME+KGLKP SR WNAVLVACSKASET+AA+QI
Sbjct: 430 LVVSHFNILLSAASRRGIWRWGVRLLNKMEDKGLKPQSRHWNAVLVACSKASETTAAIQI 489
Query: 613 FSRMVEQGEKPTILSYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVG 434
F MV+ GEKPT++SYGALLSALEKGKLYDEA RVW HMIKVG++PNLYAYT +AS+ G
Sbjct: 490 FKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTG 549
Query: 433 QGKFEMVESVITEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEIT 254
Q KF ++++++ EM G+EP+VVTYNA+ISGCA NG+ A+EWF R++G+ + PNEIT
Sbjct: 550 QQKFNLLDTLLKEMASKGIEPSVVTYNAVISGCARNGLSGVAYEWFHRMRGEKVEPNEIT 609
Query: 253 YEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFGATIDVDTLGPRPL 74
YEMLI AL D+KP LAYE++L+A N+GL+LSSK YDAVV SA+ +GATID++ LGPRP
Sbjct: 610 YEMLIEALANDAKPRLAYELHLKAQNDGLKLSSKPYDAVVKSAETYGATIDLNLLGPRPH 669
Query: 73 EKKK 62
++K+
Sbjct: 670 KEKR 673
Score = 65.5 bits (158), Expect = 1e-08
Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Frame = -3
Query: 727 VRLLNKMEEKGLKPGSREWNAVLVACSKASETSAAVQIFSRMVEQGEKPTILSYGALLSA 548
++LLN M+ G KP E ++ AC++ +++ R+ E+ + ++ L+
Sbjct: 340 LKLLNAMDNAGPKPSREEHERLIWACTREEHYIVGKELYKRIRERFPEISLSVCNHLIWL 399
Query: 547 LEKGKLYDEALRVWEHMIKVGVKPNLYAY-------TILASIYVGQGKFEMVESVITEMV 389
+ K K + AL ++E ++ G +PN +Y IL S +G + ++ +M
Sbjct: 400 MGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASRRGIWRWGVRLLNKME 459
Query: 388 DSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGKNISPNEITYEMLILALGRDSKPI 209
D G++P +NA++ C+ T+A + F + P I+Y L+ AL +
Sbjct: 460 DKGLKPQSRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYD 519
Query: 208 LAYEMYLRAHNEGLRLSSKAY 146
A+ ++ G+ + AY
Sbjct: 520 EAFRVWNHMIKVGIEPNLYAY 540