BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038160
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    82   6e-14
ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_002316903.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-11

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = -1

Query: 225 NLFKRISSLGDQTVSVVPLLQQWVIEEERSVTEDELNNFIKYLKARKRFKHALEISQWMS 46
           NL++RIS +GD  +SV PLL QWV+E  R V +DEL + IK L+  KRFKHALEIS+WMS
Sbjct: 30  NLYRRISPVGDPNISVTPLLDQWVLEG-RLVQQDELRHIIKELRVYKRFKHALEISKWMS 88

Query: 45  DQRYIPLSTVGVAGR 1
           D+RY PLST  +A R
Sbjct: 89  DKRYFPLSTADIAIR 103


>ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = -1

Query: 225 NLFKRISSLGDQTVSVVPLLQQWVIEEERSVTEDELNNFIKYLKARKRFKHALEISQWMS 46
           NL++RIS +GD  +SV PLL QWV+E  R V +DEL + IK L+  KRFKHALEIS+WMS
Sbjct: 30  NLYRRISPVGDPNISVTPLLDQWVLEG-RLVQQDELRHIIKELRVYKRFKHALEISKWMS 88

Query: 45  DQRYIPLSTVGVAGR 1
           D+RY PLST  +A R
Sbjct: 89  DKRYFPLSTADIAIR 103


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 42/74 (56%), Positives = 55/74 (74%)
 Frame = -1

Query: 222 LFKRISSLGDQTVSVVPLLQQWVIEEERSVTEDELNNFIKYLKARKRFKHALEISQWMSD 43
           L++RIS +GD  VS+VP+L QW IEE +SV +D+L  FIK L+  KR+ HALEIS WMSD
Sbjct: 51  LYRRISPVGDPKVSIVPILDQW-IEEGKSVNKDQLQVFIKELRYCKRYTHALEISMWMSD 109

Query: 42  QRYIPLSTVGVAGR 1
           +RY  L++  VA R
Sbjct: 110 KRYFALTSRDVAIR 123


>ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|222872228|gb|EEF09359.1|
           predicted protein [Populus trichocarpa]
          Length = 501

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
 Frame = -1

Query: 252 RALLYATDT-----NLFKRISSLGDQTVSVVPLLQQWVIEEERSVTEDELNNFIKYLKAR 88
           RAL ++TDT     +L +RIS + D  V V+P++++WV +E + VT  +L +FI+ L+  
Sbjct: 20  RALCFSTDTTAISHSLNRRISMVEDPMVPVIPVIEKWV-QEGQVVTNSDLKHFIRKLRKI 78

Query: 87  KRFKHALEISQWMSDQRYIPLSTVGVAGR 1
            RF HAL+ISQWMSDQR   LS   VA R
Sbjct: 79  HRFSHALQISQWMSDQRGHNLSPGDVAVR 107


>ref|XP_002316903.1| predicted protein [Populus trichocarpa] gi|222859968|gb|EEE97515.1|
           predicted protein [Populus trichocarpa]
          Length = 437

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/63 (55%), Positives = 44/63 (69%)
 Frame = -1

Query: 225 NLFKRISSLGDQTVSVVPLLQQWVIEEERSVTEDELNNFIKYLKARKRFKHALEISQWMS 46
           NL+ RIS LGD  +S+ P+L QWV EE + V + EL   +K L+ RKRFK ALE+SQWMS
Sbjct: 1   NLYSRISPLGDPRISLAPVLDQWV-EEGKKVKDYELRTIVKGLRERKRFKQALEVSQWMS 59

Query: 45  DQR 37
             R
Sbjct: 60  SNR 62