BLASTX nr result

ID: Coptis25_contig00038051 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038051
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160609.1| PREDICTED: 26S proteasome non-ATPase regulat...    58   8e-07
ref|XP_004141249.1| PREDICTED: 26S proteasome non-ATPase regulat...    58   8e-07
gb|AFK36477.1| unknown [Medicago truncatula]                           58   8e-07
ref|XP_003544454.1| PREDICTED: 26S proteasome non-ATPase regulat...    58   8e-07
ref|XP_003542979.1| PREDICTED: 26S proteasome non-ATPase regulat...    58   8e-07

>ref|XP_004160609.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like
           [Cucumis sativus]
          Length = 309

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/81 (41%), Positives = 40/81 (49%)
 Frame = -2

Query: 271 VHVYVFHLIHPLTMMIGQEPRHTASSLGHLKIPPF*VNTSLIVKSLSMNANLFSYIYDLL 92
           V +  F LI+P TMM+GQEPR T S+LGHL  P                           
Sbjct: 155 VVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSI------------------------- 189

Query: 91  YQAFIHGLSKDYYSIPINYMK 29
            QA IHGL++ YYSI INY K
Sbjct: 190 -QALIHGLNRHYYSIAINYRK 209


>ref|XP_004141249.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like
           [Cucumis sativus] gi|449498695|ref|XP_004160608.1|
           PREDICTED: 26S proteasome non-ATPase regulatory subunit
           14-like [Cucumis sativus]
          Length = 309

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/81 (41%), Positives = 40/81 (49%)
 Frame = -2

Query: 271 VHVYVFHLIHPLTMMIGQEPRHTASSLGHLKIPPF*VNTSLIVKSLSMNANLFSYIYDLL 92
           V +  F LI+P TMM+GQEPR T S+LGHL  P                           
Sbjct: 155 VVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSI------------------------- 189

Query: 91  YQAFIHGLSKDYYSIPINYMK 29
            QA IHGL++ YYSI INY K
Sbjct: 190 -QALIHGLNRHYYSIAINYRK 209


>gb|AFK36477.1| unknown [Medicago truncatula]
          Length = 313

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/81 (41%), Positives = 40/81 (49%)
 Frame = -2

Query: 271 VHVYVFHLIHPLTMMIGQEPRHTASSLGHLKIPPF*VNTSLIVKSLSMNANLFSYIYDLL 92
           V +  F LI+P TMM+GQEPR T S+LGHL  P                           
Sbjct: 159 VVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSI------------------------- 193

Query: 91  YQAFIHGLSKDYYSIPINYMK 29
            QA IHGL++ YYSI INY K
Sbjct: 194 -QALIHGLNRHYYSIAINYRK 213


>ref|XP_003544454.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like
           [Glycine max] gi|356564198|ref|XP_003550343.1|
           PREDICTED: 26S proteasome non-ATPase regulatory subunit
           14-like [Glycine max]
          Length = 312

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/81 (41%), Positives = 40/81 (49%)
 Frame = -2

Query: 271 VHVYVFHLIHPLTMMIGQEPRHTASSLGHLKIPPF*VNTSLIVKSLSMNANLFSYIYDLL 92
           V +  F LI+P TMM+GQEPR T S+LGHL  P                           
Sbjct: 158 VVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSI------------------------- 192

Query: 91  YQAFIHGLSKDYYSIPINYMK 29
            QA IHGL++ YYSI INY K
Sbjct: 193 -QALIHGLNRHYYSIAINYRK 212


>ref|XP_003542979.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like
           [Glycine max]
          Length = 309

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 34/81 (41%), Positives = 40/81 (49%)
 Frame = -2

Query: 271 VHVYVFHLIHPLTMMIGQEPRHTASSLGHLKIPPF*VNTSLIVKSLSMNANLFSYIYDLL 92
           V +  F LI+P TMM+GQEPR T S+LGHL  P                           
Sbjct: 155 VVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSI------------------------- 189

Query: 91  YQAFIHGLSKDYYSIPINYMK 29
            QA IHGL++ YYSI INY K
Sbjct: 190 -QALIHGLNRHYYSIAINYRK 209


Top