BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00038035
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    63   2e-08
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    62   6e-08
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    60   2e-07
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    60   2e-07
gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indi...    55   4e-06

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)
 Frame = +3

Query: 57  RNCRGIGSSTAVQNLMGLIRQHQPDVVCLSETKASDKRMQTVRKTIKFGGYFCVSADGLK 236
           RNCRG+GS+  V  L  L++  +P +V LSETK  DK+ + +  ++ F G F VS +GL 
Sbjct: 11  RNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLS 70

Query: 237 CALAVYWKECCELEIIG 287
             LA++W     + + G
Sbjct: 71  GGLALFWTTAYTVSLRG 87


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1936

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 49/77 (63%)
 Frame = +3

Query: 51  LARNCRGIGSSTAVQNLMGLIRQHQPDVVCLSETKASDKRMQTVRKTIKFGGYFCVSADG 230
           LA NCRG+G++  VQ+L  LI++    +V L ET+ S ++M  +R+ + F G+  VS++G
Sbjct: 639 LAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEG 698

Query: 231 LKCALAVYWKECCELEI 281
               LA+YW E   +++
Sbjct: 699 KSGGLALYWDESVSVDV 715


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1557

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +3

Query: 51  LARNCRGIGSSTAVQNLMGLIRQHQPDVVCLSETKASDKRMQTVRKTIKFGGYFCVSADG 230
           L+ NCRGIG++T VQ L  L+++     V L ET+    +++ +R  +   G+  VS+DG
Sbjct: 437 LSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDG 496

Query: 231 LKCALAVYWKECCELEIIGATQNQI 305
           +   LA++W E   +EI+   +  I
Sbjct: 497 MSGGLALFWHESVHVEILNKNERFI 521


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1585

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +3

Query: 51  LARNCRGIGSSTAVQNLMGLIRQHQPDVVCLSETKASDKRMQTVRKTIKFGGYFCVSADG 230
           L+ NCRGIG++T VQ L  L+++     V L ET+    +++ +R  +   G+  VS+DG
Sbjct: 465 LSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDG 524

Query: 231 LKCALAVYWKECCELEIIGATQNQI 305
           +   LA++W E   +EI+   +  I
Sbjct: 525 MSGGLALFWHESVHVEILNKNERFI 549


>gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indica Group]
          Length = 1784

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 28/82 (34%), Positives = 47/82 (57%)
 Frame = +3

Query: 60  NCRGIGSSTAVQNLMGLIRQHQPDVVCLSETKASDKRMQTVRKTIKFGGYFCVSADGLKC 239
           NCRGIG++  V++L  L R+    +V L ET+ S +RM+ +R  +   G+   + +G+  
Sbjct: 7   NCRGIGNAATVRDLCALSREAGSQLVFLCETRQSVERMRRLRSRLGLRGFVGENCNGMSG 66

Query: 240 ALAVYWKECCELEIIGATQNQI 305
            LA++W E   +EI G  +  I
Sbjct: 67  GLALFWDESVFVEIKGINERYI 88