BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037943
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28908.3| unnamed protein product [Vitis vinifera]               99   5e-19
ref|NP_171855.1| pentatricopeptide repeat-containing protein [Ar...    96   2e-18
ref|XP_002892169.1| pentatricopeptide repeat-containing protein ...    96   2e-18
gb|ACU28370.1| At1g03560-like protein [Arabidopsis lyrata subsp....    96   2e-18
gb|ACU28367.1| At1g03560-like protein [Arabidopsis lyrata subsp....    96   2e-18

>emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 41/74 (55%), Positives = 59/74 (79%)
 Frame = +1

Query: 13  IESNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVL 192
           +ESNLD YCSKF IKLSP FV +VLK D+I+ KP++A+ FF W G+Q++Y+H+++ YV L
Sbjct: 102 MESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSL 161

Query: 193 IEILVLEKDVERIR 234
           I++L L  D +R+R
Sbjct: 162 IDVLSLSSDFDRVR 175


>ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
           gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18
           [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 660

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = +1

Query: 10  TIESNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVV 189
           ++ESNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV 
Sbjct: 98  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 157

Query: 190 LIEILVLEKDVERIR 234
           L+++L L KDV+RIR
Sbjct: 158 LVDVLALAKDVDRIR 172


>ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338011|gb|EFH68428.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 662

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = +1

Query: 10  TIESNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVV 189
           ++ESNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV 
Sbjct: 98  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 157

Query: 190 LIEILVLEKDVERIR 234
           L+++L L KDV+RIR
Sbjct: 158 LVDVLALAKDVDRIR 172


>gb|ACU28370.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
           gi|255685764|gb|ACU28371.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685766|gb|ACU28372.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685768|gb|ACU28373.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685772|gb|ACU28375.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685774|gb|ACU28376.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685776|gb|ACU28377.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
          Length = 121

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = +1

Query: 10  TIESNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVV 189
           ++ESNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV 
Sbjct: 35  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 94

Query: 190 LIEILVLEKDVERIR 234
           L+++L L KDV+RIR
Sbjct: 95  LVDVLALAKDVDRIR 109


>gb|ACU28367.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
           gi|255685760|gb|ACU28369.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
          Length = 121

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = +1

Query: 10  TIESNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVV 189
           ++ESNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV 
Sbjct: 35  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 94

Query: 190 LIEILVLEKDVERIR 234
           L+++L L KDV+RIR
Sbjct: 95  LVDVLALAKDVDRIR 109