BLASTX nr result
ID: Coptis25_contig00037863
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00037863
(822 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637498.1| F-box protein [Medicago truncatula] gi|35550... 54 4e-12
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 54 3e-11
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 54 6e-11
ref|XP_003594087.1| F-box/kelch-repeat protein [Medicago truncat... 49 8e-10
ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|35550... 45 5e-09
>ref|XP_003637498.1| F-box protein [Medicago truncatula] gi|355503433|gb|AES84636.1|
F-box protein [Medicago truncatula]
Length = 383
Score = 53.5 bits (127), Expect(2) = 4e-12
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Frame = -2
Query: 767 NLSFPG---QLSIVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLV------EQSPAD 615
N+ F G ++S++G CNGL C+S +N +A NP ++ ++ F + E +
Sbjct: 77 NIPFTGPINRMSLLGSCNGLLCIS-SNAGIAFWNPNIRKHRIIPFPPIPTPQHHESNNNI 135
Query: 614 YTRISVLGFSHDPLIDKYKAVRIDMYGS*RADADFSKAYAQYTLGINAWRRIPS-PYRLC 438
Y + GF DPL + YK +RI + + + F ++ N+W+ +P+ PY L
Sbjct: 136 YVGFCIHGFGFDPLTNDYKLIRISCFVGVQ-HSTFESHVRLFSFKTNSWKELPTMPYTLS 194
Query: 437 Y 435
Y
Sbjct: 195 Y 195
Score = 43.9 bits (102), Expect(2) = 4e-12
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Frame = -1
Query: 372 WINKTRTLDIC---SFISFDVGSEEFRRLPWNIWLGSEVNGRN----LGVLQGCLSMYGL 214
W+ TR LD+ + ++F++ E F +P+ +G +VN + + VL+GCL M +
Sbjct: 210 WV-MTRKLDLLQPRAIVAFNLTLEIFNEVPFPE-IGEDVNSESFQIGISVLEGCLCMI-V 266
Query: 213 NINKCCNEVWMMKVYGVNDSW 151
N +VW+MK YG DSW
Sbjct: 267 NYQTAKIDVWVMKEYGCRDSW 287
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein
[Populus trichocarpa]
Length = 396
Score = 53.5 bits (127), Expect(2) = 3e-11
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = -2
Query: 746 LSIVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLVEQSPADYTR---ISVLGFSHDP 576
+ ++G NGL C+S+ +A+ NP+T ++ +V F +E T+ + V GF +D
Sbjct: 96 IKVLGSVNGLLCISNVVDDIAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDS 155
Query: 575 LIDKYKAVRIDMYGS*RADADFSKAYAQYTLGINAWRRI-PSPYRLCYTG-GVAHLNGAL 402
+ D YK VRI +G F Y+L +WRRI PY + Y G NGAL
Sbjct: 156 VRDDYKLVRIAQFGG-GGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGAL 214
Score = 40.8 bits (94), Expect(2) = 3e-11
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = -1
Query: 333 ISFDVGSEEFRRLPWNIWLGSEVNGRN----LGVLQGCLSMYGLNINKCCNEVWMMKVYG 166
++ D+G E++R + L E +N LGVL+GCL + + +VWMMK YG
Sbjct: 231 VALDLGVEDYREV-----LQPEYKDKNFYIDLGVLRGCLCFLANFLGERV-DVWMMKEYG 284
Query: 165 VNDSWS 148
V +SW+
Sbjct: 285 VKESWT 290
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 54.3 bits (129), Expect(2) = 6e-11
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = -2
Query: 746 LSIVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLVEQSP---ADYTRISVLGFSHDP 576
+ I+G CNGL C+ + +AL NP+ + +V + VE R+SV GF +D
Sbjct: 89 VKILGSCNGLLCICNIVDDIALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDL 148
Query: 575 LIDKYKAVRIDMYGS*RADADFSKAYAQYTLGINAWRRIPS-PYRLCYTG-GVAHLNGAL 402
D YK VRI +G + F ++L N+WRRI PY + Y G + NGAL
Sbjct: 149 SNDDYKLVRIAQFGGVDRKS-FESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGAL 207
Score = 39.3 bits (90), Expect(2) = 6e-11
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = -1
Query: 339 SFISFDVGSEEFRRLPWNIWLGSEVNGRNLGVLQGCLSMYGLNINKCCNEVWMMKVYGVN 160
+ ++ D+G E++ +P ++ N +GVLQGCLS+ ++ +VW+M+ Y V
Sbjct: 222 TIVALDLGVEDYHVVPKPEFVDMNCN-MGVGVLQGCLSLLAYARSERV-DVWVMEEYMVK 279
Query: 159 DSWS 148
+SWS
Sbjct: 280 ESWS 283
>ref|XP_003594087.1| F-box/kelch-repeat protein [Medicago truncatula]
gi|355483135|gb|AES64338.1| F-box/kelch-repeat protein
[Medicago truncatula]
Length = 375
Score = 48.5 bits (114), Expect(2) = 8e-10
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = -2
Query: 740 IVGFCNGLSCLSDNNTYMALSNPATAENILVSFGLVEQSPADYTRISVLGFSHDPLIDKY 561
IVG C+G+ C + + + L NP+ + + + + YT + GF +D D Y
Sbjct: 116 IVGSCHGILCFALDECFALLRNPSIRKFTQLPSLDIPKREGSYT---IYGFGYDHFNDTY 172
Query: 560 KAVRIDMYGS*RADADFSKAYAQ----YTLGINAWRRI 459
K V ++ + S D++ SK Y YTLG + WRRI
Sbjct: 173 KVVAVNCFES-DTDSNGSKVYKTEVKVYTLGTDYWRRI 209
Score = 41.2 bits (95), Expect(2) = 8e-10
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = -1
Query: 381 TSRWINKTRTLDICSFISFDVGSEEFRRLPWNIWLGSEVNGRNLGVLQGCLSMYGLNINK 202
T W+ +S D+ E ++ L + VN LGVL+ CL + L +
Sbjct: 228 TINWLAAKDPYTSWIIVSLDLEEETYQYLLQPDYGAVTVNSVTLGVLRDCLCI--LAHSD 285
Query: 201 CCNEVWMMKVYGVNDSWS 148
++VW+MK YG NDSW+
Sbjct: 286 TFSDVWLMKEYGNNDSWT 303
>ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|355503429|gb|AES84632.1|
F-box protein [Medicago truncatula]
Length = 381
Score = 45.4 bits (106), Expect(2) = 5e-09
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Frame = -2
Query: 746 LSIVGFCNGLSCLSDNNTYMALSNPATAEN-ILVSFGLVEQSPAD----YTRISVLGFSH 582
+S+VG CNGL CL + +A NP ++ I+ S + ++ Y V GF
Sbjct: 87 ISLVGSCNGLLCLFSDGE-IAFWNPTICKHRIIPSLPIPTPQHSEPNNIYADFCVYGFGF 145
Query: 581 DPLIDKYKAVRIDMYGS*RADADFSKAYAQYTLGINAWRRIPS-PYRLCY 435
DPL D YK + I + + S A ++ N+W+ +P+ PY L Y
Sbjct: 146 DPLTDDYKLLTIFCFVEIQQSTSESHA-RLFSSKTNSWKELPTMPYTLYY 194
Score = 41.6 bits (96), Expect(2) = 5e-09
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = -1
Query: 333 ISFDVGSEEFRRLPWNIWLGSEVNGRN----LGVLQGCLSMYGLNINKCCNEVWMMKVYG 166
++F++ E F +P+ +G EVN + + VL+GCL M +N +VW+MK YG
Sbjct: 223 VAFNLTHEIFNEVPFPE-IGEEVNSESFEIGVAVLEGCLCMT-VNYQTVKIDVWLMKEYG 280
Query: 165 VNDSW 151
DSW
Sbjct: 281 CRDSW 285