BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037830
         (877 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi...   233   6e-59
ref|XP_002869525.1| pentatricopeptide repeat-containing protein ...   169   8e-40
ref|XP_003623229.1| Pentatricopeptide repeat-containing protein ...   167   4e-39
ref|NP_194530.1| pentatricopeptide repeat-containing protein [Ar...   167   4e-39
gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]             166   8e-39

>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  233 bits (593), Expect = 6e-59
 Identities = 112/258 (43%), Positives = 166/258 (64%)
 Frame = -3

Query: 776 HPHIRPSHANTVLRYFLCTTASYNTQAELESHIKYLCEKPKCQFLKAVNDFDKAIASGLT 597
           HPH+           F  +     +  +LE+ ++ LC+KP  QF +AV+ F  A+   L 
Sbjct: 12  HPHLPSQSLYLCFNLFSSSIPIPISPNDLETQLRSLCQKPNSQFTEAVSLFHSALDFNLL 71

Query: 596 PFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGV 417
           P  +TCNFL+D LA+S+ YGLA S Y R+  +  LP++ S  +L++C+    K +  FGV
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 416 VGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCK 237
           VGL+ K G++V VF +NI+L+ LC+   V +A+ + RE GR  ++PD+++YNTLINGLCK
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 236 VKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVF 57
            K  ++A+GLL  +M  + C P+  T T LMDGLCKDGR+DE + L + M+++G  ADV 
Sbjct: 192 AKKLKEAVGLL-LEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVV 250

Query: 56  AYTTIIDGLCNSGKVDRG 3
            Y T+I G CN+G +DRG
Sbjct: 251 LYGTLISGFCNNGNLDRG 268



 Score =  105 bits (263), Expect = 1e-20
 Identities = 76/235 (32%), Positives = 110/235 (46%)
 Frame = -3

Query: 713 SYNTQAELESHIKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGL 534
           SYNT       I  LC+  K +  +AV    +  A+G  P   TC  L+D L K      
Sbjct: 181 SYNTL------INGLCKAKKLK--EAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDE 232

Query: 533 AVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILR 354
           A+     +   GF  +   + +L+  + + G L+    +   M   G S  V   + ++ 
Sbjct: 233 AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVH 292

Query: 353 ALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCS 174
            LC+  +  +A  V      + I PDV+TY  LI+GLCK      A+ LL   MVE    
Sbjct: 293 GLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL-MVEKGEE 351

Query: 173 PDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVD 9
           P   TY  L+ GLCK+G V +   +   M E+G  ADV  Y T++ GLC+ GKVD
Sbjct: 352 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVD 406



 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 63/218 (28%), Positives = 110/218 (50%)
 Frame = -3

Query: 671  LCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFL 492
            LC++ +    KAV    K +  G      T N L+    K+ +   A+  + ++  +GF+
Sbjct: 436  LCKEGR--LTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFV 493

Query: 491  PNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEV 312
            PN +++  L+D +     L  A G+   M   G +  +F  N ++ +LCK+  + +A  +
Sbjct: 494  PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSL 553

Query: 311  FREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLC 132
            F+E G     PD+I++NT+I+G  K   F Q +  L+  MVE    PD  T++ L++ L 
Sbjct: 554  FQEMGNANCEPDIISFNTMIDGTLKAGDF-QFVKELQMKMVEMGLRPDALTFSTLINRLS 612

Query: 131  KDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSG 18
            K G +DE  S  + M   G + D   Y +++ GL + G
Sbjct: 613  KLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKG 650



 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 1/206 (0%)
 Frame = -3

Query: 626 FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLH 447
           FD+ +  G++    T + L+  L +  ++  A +  N +A  G  P+  ++  L+D    
Sbjct: 272 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 331

Query: 446 KGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVIT 267
            G+   A  ++ LM + G        N++L  LCK+  V+ A ++ R         DV+T
Sbjct: 332 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 391

Query: 266 YNTLINGLCKVKMFEQALGLLRFDMVESKC-SPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           YNTL+ GLC     ++AL L         C  P+V T+  L+ GLCK+GR+ + + +  +
Sbjct: 392 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 451

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKV 12
           M ++G   ++  Y  ++ G   +GK+
Sbjct: 452 MVKKGSCGNLVTYNMLLGGCLKAGKI 477



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 2/226 (0%)
 Frame = -3

Query: 680  IKYLCEKPKC-QFLKAVND-FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIA 507
            +K LC+K K  + LK  N  FD    + L P   T N LI  L K      AV  + ++ 
Sbjct: 396  MKGLCDKGKVDEALKLFNSMFDNE--NCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMV 453

Query: 506  LIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVV 327
              G   N  ++  LL   L  GK++ A  +   +  LG+    F  +I++   CK R + 
Sbjct: 454  KKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLN 513

Query: 326  KAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDL 147
             A  +F E   + + P +  YNTL+  LCK    EQA  L + +M  + C PD+ ++  +
Sbjct: 514  IAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQ-EMGNANCEPDIISFNTM 572

Query: 146  MDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVD 9
            +DG  K G       L  +M E GL  D   ++T+I+ L   G++D
Sbjct: 573  IDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD 618



 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 55/208 (26%), Positives = 106/208 (50%), Gaps = 5/208 (2%)
 Frame = -3

Query: 614 IASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALI---GFLPNYYSFCSLLDCYLHK 444
           +  G  P   T N L+  L K    GL + A+  + ++   G   +  ++ +L+     K
Sbjct: 346 VEKGEEPSNVTYNVLLSGLCKE---GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDK 402

Query: 443 GKLEFAFGVVGLMFKLGYSVQ--VFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVI 270
           GK++ A  +   MF     ++  VF  N+++  LCK+  + KA+++ R+  +     +++
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 269 TYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           TYN L+ G  K    ++A+ L +  +++    P+  TY+ L+DG CK   ++    LF E
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWK-QVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCE 521

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKVDR 6
           M+  GL+  +F Y T++  LC  G +++
Sbjct: 522 MRTHGLNPALFDYNTLMASLCKEGSLEQ 549


>ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315361|gb|EFH45784.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 707

 Score =  169 bits (428), Expect = 8e-40
 Identities = 90/235 (38%), Positives = 141/235 (60%)
 Frame = -3

Query: 707 NTQAELESHIKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAV 528
           NT +E E+ ++ LCE    Q   AV+ F +A+ SG +      N L+ TL +S+ + +A 
Sbjct: 34  NTFSETETKLRSLCEDSNPQLKNAVSVFQQAVDSGGS-LSFAGNNLMATLVRSRNHEVAF 92

Query: 527 SAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRAL 348
           S Y ++       N+ S   LL+C++   K  FA GV+ LM K G++  V++ NI+L+ L
Sbjct: 93  SFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGL 152

Query: 347 CKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPD 168
           C+  E  KA+ + RE  +N + PDV++YNT+I G C+ K  E+AL L   +M  S CS  
Sbjct: 153 CRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLAN-EMQGSGCSWS 211

Query: 167 VKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVDRG 3
           + T+  L+D  CK G++DE + L  EM+ +GL AD+  YT++I G C+ G++DRG
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRG 266



 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 1/208 (0%)
 Frame = -3

Query: 626 FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLH 447
           FD+ +  G +P   T N LI    K      A   +  +   G  PN Y++  L+D    
Sbjct: 270 FDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCG 329

Query: 446 KGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVIT 267
            GK + A  ++ LM +      V   NII+  LCK   V  A+E+     +    PD IT
Sbjct: 330 VGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNIT 389

Query: 266 YNTLINGLCKVKMFEQALGLLRFDMVESK-CSPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           YN+L+ GLC     ++A  LL   + +S    PDV ++  L+ GLCK  R+ + + ++D 
Sbjct: 390 YNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDL 449

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKVDR 6
           + E+  + D+     +++    SG V++
Sbjct: 450 LVEKLGAGDIVTTNILLNSTLKSGDVNK 477



 Score = 94.4 bits (233), Expect = 3e-17
 Identities = 58/193 (30%), Positives = 101/193 (52%)
 Frame = -3

Query: 584  TCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLM 405
            T N L+++  KS +   A+  + +I+    +PN  ++ +++D +   G L  A G++  M
Sbjct: 461  TTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKM 520

Query: 404  FKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMF 225
                    VF  N +L +LCKK  + +A  +F E  R++  PDVI++N +I+G  K    
Sbjct: 521  RLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDI 580

Query: 224  EQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTT 45
            + A  LL   M  +  SPD+ TY+ L++   K G +DE IS FD+M + G   D     +
Sbjct: 581  KSAESLL-VGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDS 639

Query: 44   IIDGLCNSGKVDR 6
            ++    + G+ D+
Sbjct: 640  VLKYCISQGETDK 652



 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 65/223 (29%), Positives = 105/223 (47%)
 Frame = -3

Query: 680 IKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALI 501
           +K LC     +F KAV+   +   + L P   + N +I    + KE   A+   N +   
Sbjct: 149 LKGLCRN--LEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGS 206

Query: 500 GFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKA 321
           G   +  ++  L+D +   GK++ A G++  M   G    +     ++R  C   E+ + 
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRG 266

Query: 320 IEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMD 141
             +F E      +P  ITYNTLI G CK+   ++A  +  F M+E    P+V TYT L+D
Sbjct: 267 KALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEF-MMERGVRPNVYTYTGLID 325

Query: 140 GLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKV 12
           GLC  G+  E + L + M ++    +V  Y  II+ LC    V
Sbjct: 326 GLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLV 368



 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 51/160 (31%), Positives = 83/160 (51%)
 Frame = -3

Query: 491 PNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEV 312
           P+  SF +L+       +L  A  +  L+ +   +  +   NI+L +  K  +V KA+E+
Sbjct: 422 PDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMEL 481

Query: 311 FREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLC 132
           +++   ++I P+  TY T+I+G CK  M   A GLL   M  S+  P V  Y  L+  LC
Sbjct: 482 WKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLL-CKMRLSELPPSVFDYNCLLSSLC 540

Query: 131 KDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKV 12
           K G +D+   LF+EMQ      DV ++  +IDG   +G +
Sbjct: 541 KKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDI 580


>ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498244|gb|AES79447.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  167 bits (422), Expect = 4e-39
 Identities = 77/198 (38%), Positives = 128/198 (64%)
 Frame = -3

Query: 596 PFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGV 417
           P  S+CN LID L K+K Y   +S ++++A +   P + S  +L++ +++  K  FAFGV
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 416 VGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCK 237
           +GL+ K G+ + V++ N++L+  C+  +  KA+++F    RN + PD ++YNT+INGLCK
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCK 176

Query: 236 VKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVF 57
            K   +A  L + +M   +C P+  T++ L+DG CK+G V+EG  L +EM++ GL  DVF
Sbjct: 177 GKRLVEAKELFK-EMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVF 235

Query: 56  AYTTIIDGLCNSGKVDRG 3
            Y+ +I G C+ G ++RG
Sbjct: 236 VYSALISGFCSKGDIERG 253



 Score =  116 bits (291), Expect = 6e-24
 Identities = 70/211 (33%), Positives = 110/211 (52%)
 Frame = -3

Query: 641 KAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLL 462
           KA++ F     + L P   + N +I+ L K K    A   +  +      PN  +F +L+
Sbjct: 147 KAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALI 206

Query: 461 DCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIA 282
           D +   G +E  FG++  M K+G    VF  + ++   C K ++ +  E+F E  R  + 
Sbjct: 207 DGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVT 266

Query: 281 PDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGIS 102
           P+V+TY+ L+N LCK + +++A  +L   M   K  PDV  YT L DGL K+GR  + I 
Sbjct: 267 PNVVTYSCLMNALCKKQKWKEAAQMLD-TMTGCKVRPDVVAYTVLADGLSKNGRASDAIK 325

Query: 101 LFDEMQERGLSADVFAYTTIIDGLCNSGKVD 9
           + D M +RG   +   Y  II+GLC  G+VD
Sbjct: 326 VLDLMVKRGEEPNNVTYNAIINGLCKEGRVD 356



 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 1/208 (0%)
 Frame = -3

Query: 626 FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLH 447
           F++ +   +TP   T + L++ L K +++  A    + +      P+  ++  L D    
Sbjct: 257 FNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSK 316

Query: 446 KGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVIT 267
            G+   A  V+ LM K G        N I+  LCK+  V  A+ +     +    PDV+T
Sbjct: 317 NGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVT 376

Query: 266 YNTLINGLCKVKMFEQALGLLRFDM-VESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           Y+TL+ GLC V   ++A+ LL   M  E    PDV  +  ++  LCK  R+     ++  
Sbjct: 377 YSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYT 436

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKVDR 6
           M ERG  +++  Y  +IDG  ++GK+ +
Sbjct: 437 MVERGFPSNIVTYNILIDGYLSAGKLTK 464



 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
 Frame = -3

Query: 638  AVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLD 459
            A+   D  +  G  P   T N +I+ L K      A+     +A  G  P+  ++ +L+ 
Sbjct: 323  AIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVK 382

Query: 458  CYLHKGKLEFAFGVVGLMFKLGYSVQ--VFHLNIILRALCKKR----------------- 336
                 GK++ A  ++ L+    + ++  VF  N++++ LCK+R                 
Sbjct: 383  GLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGF 442

Query: 335  ------------------EVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALG 210
                              ++ KA+E++++   + I+P+  TY  LINGLCK++M   A G
Sbjct: 443  PSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKG 502

Query: 209  LLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGL 30
            L       S   P V  Y  LM  LC++  V++  +LF EM+      DV ++  IIDG 
Sbjct: 503  LFNKKRA-SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGT 561

Query: 29   CNSGKVD 9
              +G V+
Sbjct: 562  LKAGDVE 568



 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 54/209 (25%), Positives = 94/209 (44%)
 Frame = -3

Query: 641  KAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLL 462
            KA+  +  A+ SG++P  +T   LI+ L K +   +A   +N+    G  P    + +L+
Sbjct: 464  KALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLM 523

Query: 461  DCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIA 282
                 +  +E A  +   M    +   V   NII+    K  +V  A E+  E     + 
Sbjct: 524  ASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLV 583

Query: 281  PDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGIS 102
            PD IT++ LIN   K+   ++A  L    MV     PD   +  L+ G    G+ ++ +S
Sbjct: 584  PDNITFSILINRFLKLGQLDEAASLYE-RMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVS 642

Query: 101  LFDEMQERGLSADVFAYTTIIDGLCNSGK 15
            +  +M ++ +  D    +TI+  LCN  K
Sbjct: 643  MLQQMADKDVVLDSKLTSTILACLCNMSK 671



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 56/225 (24%), Positives = 101/225 (44%)
 Frame = -3

Query: 680  IKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALI 501
            I+ LC++ + +  K V  +   +  G      T N LID    + +   A+  +      
Sbjct: 418  IQELCKQRRLRHAKRV--YYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDS 475

Query: 500  GFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKA 321
            G  PN  ++  L++       L  A G+       G    V   N ++ +LC++  V +A
Sbjct: 476  GISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQA 535

Query: 320  IEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMD 141
              +F+E       PDV+++N +I+G  K    E A  LL  +M+     PD  T++ L++
Sbjct: 536  RNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELL-LEMLNMNLVPDNITFSILIN 594

Query: 140  GLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVDR 6
               K G++DE  SL++ M   G   D   + +++ G    GK ++
Sbjct: 595  RFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEK 639



 Score = 73.2 bits (178), Expect = 7e-11
 Identities = 53/190 (27%), Positives = 84/190 (44%)
 Frame = -3

Query: 578 NFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFK 399
           N +I  L K +    A   Y  +   GF  N  ++  L+D YL  GKL  A  +      
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVD 474

Query: 398 LGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQ 219
            G S       +++  LCK + +  A  +F +   +   P V  YNTL+  LC+    EQ
Sbjct: 475 SGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQ 534

Query: 218 ALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTII 39
           A  L + +M  +   PDV ++  ++DG  K G V+    L  EM    L  D   ++ +I
Sbjct: 535 ARNLFQ-EMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILI 593

Query: 38  DGLCNSGKVD 9
           +     G++D
Sbjct: 594 NRFLKLGQLD 603


>ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g28010 gi|4455360|emb|CAB36770.1| putative protein
           [Arabidopsis thaliana] gi|7269655|emb|CAB79603.1|
           putative protein [Arabidopsis thaliana]
           gi|332660020|gb|AEE85420.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  167 bits (422), Expect = 4e-39
 Identities = 91/235 (38%), Positives = 137/235 (58%)
 Frame = -3

Query: 707 NTQAELESHIKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAV 528
           N  +E E+ ++ LCE    Q   AV+ F +A+ SG +      N L+  L +S+ + LA 
Sbjct: 34  NAFSETETKLRSLCEDSNPQLKNAVSVFQQAVDSG-SSLAFAGNNLMAKLVRSRNHELAF 92

Query: 527 SAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRAL 348
           S Y ++       N+ S   LL+CY+   K  FAFGV+ LM K G++  V++ NI+L+ L
Sbjct: 93  SFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGL 152

Query: 347 CKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPD 168
           C+  E  KA+ + RE  RN + PDV +YNT+I G C+ K  E+AL L   +M  S CS  
Sbjct: 153 CRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN-EMKGSGCSWS 211

Query: 167 VKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVDRG 3
           + T+  L+D  CK G++DE +    EM+  GL AD+  YT++I G C+ G++DRG
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266



 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 66/223 (29%), Positives = 105/223 (47%)
 Frame = -3

Query: 680 IKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALI 501
           +K LC   +C   KAV+   +   + L P   + N +I    + KE   A+   N +   
Sbjct: 149 LKGLCRNLECG--KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206

Query: 500 GFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKA 321
           G   +  ++  L+D +   GK++ A G +  M  +G    +     ++R  C   E+ + 
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266

Query: 320 IEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMD 141
             +F E      +P  ITYNTLI G CK+   ++A  +  F M+E    P+V TYT L+D
Sbjct: 267 KALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEF-MIERGVRPNVYTYTGLID 325

Query: 140 GLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKV 12
           GLC  G+  E + L + M E+    +   Y  II+ LC  G V
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368



 Score = 92.4 bits (228), Expect = 1e-16
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 1/208 (0%)
 Frame = -3

Query: 626 FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLH 447
           FD+ +  G +P   T N LI    K  +   A   +  +   G  PN Y++  L+D    
Sbjct: 270 FDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCG 329

Query: 446 KGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVIT 267
            GK + A  ++ LM +          NII+  LCK   V  A+E+     +    PD IT
Sbjct: 330 VGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389

Query: 266 YNTLINGLCKVKMFEQALGLLRFDMVESK-CSPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           YN L+ GLC     ++A  LL   + +S    PDV +Y  L+ GLCK+ R+ + + ++D 
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKVDR 6
           + E+  + D      +++    +G V++
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNK 477



 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 54/193 (27%), Positives = 99/193 (51%)
 Frame = -3

Query: 584  TCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLM 405
            T N L+++  K+ +   A+  + +I+    + N  ++ +++D +   G L  A G++  M
Sbjct: 461  TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKM 520

Query: 404  FKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMF 225
                    VF  N +L +LCK+  + +A  +F E  R+   PDV+++N +I+G  K    
Sbjct: 521  RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDI 580

Query: 224  EQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTT 45
            + A  LL   M  +  SPD+ TY+ L++   K G +DE IS FD+M + G   D     +
Sbjct: 581  KSAESLL-VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639

Query: 44   IIDGLCNSGKVDR 6
            ++    + G+ D+
Sbjct: 640  VLKYCISQGETDK 652


>gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  166 bits (419), Expect = 8e-39
 Identities = 91/235 (38%), Positives = 138/235 (58%)
 Frame = -3

Query: 707 NTQAELESHIKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAV 528
           N  +E E+ ++ LCE    Q   AV+ F +A+ SG +   +  N L+  L +S+ + LA 
Sbjct: 34  NAFSETETKLRSLCEDSNPQLKNAVSVFQQAVDSGSSLAFAGSN-LMAKLVRSRNHELAF 92

Query: 527 SAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRAL 348
           S Y ++       N+ S   LL+CY+   K  FAFGV+ LM K G++  V++ NI+L+ L
Sbjct: 93  SFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGL 152

Query: 347 CKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPD 168
           C+  E  KA+ + RE  RN + PDV +YNT+I G C+ K  E+AL L   +M  S CS  
Sbjct: 153 CRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN-EMKGSGCSWS 211

Query: 167 VKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKVDRG 3
           + T+  L+D  CK G++DE +    EM+  GL AD+  YT++I G C+ G++DRG
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266



 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 65/223 (29%), Positives = 104/223 (46%)
 Frame = -3

Query: 680 IKYLCEKPKCQFLKAVNDFDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALI 501
           +K LC   +C   KAV+   +   + L P   + N +I    + KE   A+   N +   
Sbjct: 149 LKGLCRNLECG--KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206

Query: 500 GFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKA 321
           G   +  ++  L+D +   GK++ A G +  M  +G    +     ++R  C   E+ + 
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266

Query: 320 IEVFREWGRNEIAPDVITYNTLINGLCKVKMFEQALGLLRFDMVESKCSPDVKTYTDLMD 141
             +F E      +P  ITYNTLI G CK+   ++A  +  F M+E    P+V TYT L+D
Sbjct: 267 KALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEF-MIERGVRPNVYTYTGLID 325

Query: 140 GLCKDGRVDEGISLFDEMQERGLSADVFAYTTIIDGLCNSGKV 12
           GLC  G+  E +   + M E+    +   Y  II+ LC  G V
Sbjct: 326 GLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368



 Score = 91.3 bits (225), Expect = 3e-16
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 1/208 (0%)
 Frame = -3

Query: 626 FDKAIASGLTPFPSTCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLH 447
           FD+ +  G +P   T N LI    K  +   A   +  +   G  PN Y++  L+D    
Sbjct: 270 FDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCG 329

Query: 446 KGKLEFAFGVVGLMFKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVIT 267
            GK + A   + LM +          NII+  LCK   V  A+E+     +    PD IT
Sbjct: 330 VGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389

Query: 266 YNTLINGLCKVKMFEQALGLLRFDMVESK-CSPDVKTYTDLMDGLCKDGRVDEGISLFDE 90
           YN L+ GLC     ++A  LL   + +S    PDV +Y  L+ GLCK+ R+ + + ++D 
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449

Query: 89  MQERGLSADVFAYTTIIDGLCNSGKVDR 6
           + E+  + D      +++    +G V++
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNK 477



 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 54/193 (27%), Positives = 99/193 (51%)
 Frame = -3

Query: 584  TCNFLIDTLAKSKEYGLAVSAYNRIALIGFLPNYYSFCSLLDCYLHKGKLEFAFGVVGLM 405
            T N L+++  K+ +   A+  + +I+    + N  ++ +++D +   G L  A G++  M
Sbjct: 461  TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKM 520

Query: 404  FKLGYSVQVFHLNIILRALCKKREVVKAIEVFREWGRNEIAPDVITYNTLINGLCKVKMF 225
                    VF  N +L +LCK+  + +A  +F E  R+   PDV+++N +I+G  K    
Sbjct: 521  RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDI 580

Query: 224  EQALGLLRFDMVESKCSPDVKTYTDLMDGLCKDGRVDEGISLFDEMQERGLSADVFAYTT 45
            + A  LL   M  +  SPD+ TY+ L++   K G +DE IS FD+M + G   D     +
Sbjct: 581  KSAESLL-VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639

Query: 44   IIDGLCNSGKVDR 6
            ++    + G+ D+
Sbjct: 640  VLKYCISQGETDK 652