BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037804
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15551.3| unnamed protein product [Vitis vinifera]              213   1e-53
ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containi...   213   1e-53
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi...   208   4e-52
ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containi...   205   3e-51
ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containi...   203   1e-50

>emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  213 bits (542), Expect = 1e-53
 Identities = 99/140 (70%), Positives = 121/140 (86%)
 Frame = -1

Query: 420 ERMNRSTFTCALSTCADMAALEFGKQVHGRLVKAGYEMGCYVGNALVLMYGKCGSVEEAY 241
           ER+NRSTFT  LSTCA++AALE GKQVHGR+VKAG E GCYVGNAL++MY KCG++++AY
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 368

Query: 240 DVFESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIKPDDVTMVGVLSACSHSG 61
            VFE ++EK++V+WNTMI  YA+HGFGKEAL +F+SM    I PDDVTMVGVLSACSH+G
Sbjct: 369 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 428

Query: 60  LIDKGTGYFHSMCLEYGITA 1
           L+DKGT YF+SM  +YGITA
Sbjct: 429 LVDKGTEYFYSMTQDYGITA 448


>ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  213 bits (542), Expect = 1e-53
 Identities = 99/140 (70%), Positives = 121/140 (86%)
 Frame = -1

Query: 420 ERMNRSTFTCALSTCADMAALEFGKQVHGRLVKAGYEMGCYVGNALVLMYGKCGSVEEAY 241
           ER+NRSTFT  LSTCA++AALE GKQVHGR+VKAG E GCYVGNAL++MY KCG++++AY
Sbjct: 390 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 449

Query: 240 DVFESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIKPDDVTMVGVLSACSHSG 61
            VFE ++EK++V+WNTMI  YA+HGFGKEAL +F+SM    I PDDVTMVGVLSACSH+G
Sbjct: 450 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 509

Query: 60  LIDKGTGYFHSMCLEYGITA 1
           L+DKGT YF+SM  +YGITA
Sbjct: 510 LVDKGTEYFYSMTQDYGITA 529


>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  208 bits (529), Expect = 4e-52
 Identities = 94/139 (67%), Positives = 116/139 (83%)
 Frame = -1

Query: 420 ERMNRSTFTCALSTCADMAALEFGKQVHGRLVKAGYEMGCYVGNALVLMYGKCGSVEEAY 241
           E +NRSTF CALS CAD+AALE GKQVHG++V+ GYE GC VGNALV MY KCG ++EAY
Sbjct: 374 ESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAY 433

Query: 240 DVFESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIKPDDVTMVGVLSACSHSG 61
           DVF+ +Q KD+V+WNTM+  YA+HGFG++AL VF+SM    +KPD++TMVGVLSACSH+G
Sbjct: 434 DVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTG 493

Query: 60  LIDKGTGYFHSMCLEYGIT 4
           L D+GT YFHSM  +YGIT
Sbjct: 494 LTDRGTEYFHSMNKDYGIT 512


>ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  205 bits (522), Expect = 3e-51
 Identities = 94/138 (68%), Positives = 118/138 (85%)
 Frame = -1

Query: 420 ERMNRSTFTCALSTCADMAALEFGKQVHGRLVKAGYEMGCYVGNALVLMYGKCGSVEEAY 241
           E  NRSTF+CALSTCAD+AALE GKQVHG++VKAG+E GC+VGNAL+ MY KCGS +EA 
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAN 446

Query: 240 DVFESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIKPDDVTMVGVLSACSHSG 61
           DVFE ++EKD+V+WNTMI  YA+HGFG++AL +F+SM    +KPD++TMVGVLSACSHSG
Sbjct: 447 DVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 60  LIDKGTGYFHSMCLEYGI 7
           LID+GT YF+SM  +Y +
Sbjct: 507 LIDRGTEYFYSMDRDYNV 524


>ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  203 bits (516), Expect = 1e-50
 Identities = 96/138 (69%), Positives = 116/138 (84%)
 Frame = -1

Query: 414 MNRSTFTCALSTCADMAALEFGKQVHGRLVKAGYEMGCYVGNALVLMYGKCGSVEEAYDV 235
           +NRS   CALS+CA++AALE GKQ+HGRLVKAG++ G   GNAL+ MYGKCGS+EEA+DV
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDV 462

Query: 234 FESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIKPDDVTMVGVLSACSHSGLI 55
           FE + EKD+V+WNTMI  YA+HGFGKEAL +F+SM M  IKPDDVT+VGVLSACSH+GL+
Sbjct: 463 FEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGLV 521

Query: 54  DKGTGYFHSMCLEYGITA 1
           DKG  YF+SM   YGITA
Sbjct: 522 DKGMEYFNSMYQNYGITA 539



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/88 (36%), Positives = 54/88 (61%)
 Frame = -1

Query: 291 NALVLMYGKCGSVEEAYDVFESMQEKDLVTWNTMITCYAKHGFGKEALKVFDSMTMKDIK 112
           N ++  Y K G++  A  +F  M EKD+V+WN M++ +A++GF +EA K+FD M +K   
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK--- 182

Query: 111 PDDVTMVGVLSACSHSGLIDKGTGYFHS 28
            ++++  G+LSA   +G I+     F S
Sbjct: 183 -NEISWNGLLSAYVQNGRIEDARRLFDS 209