BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037776
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   210   1e-52
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   207   6e-52
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   201   4e-50
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   200   1e-49
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   197   6e-49

>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1198

 Score =  210 bits (534), Expect = 1e-52
 Identities = 100/177 (56%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
 Frame = -1

Query: 529 DGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAP 350
           DGTC+  F++ TAFSFKSTA+ AV+KC+FK+EF + +I E+KQY   S L++L+QL+SAP
Sbjct: 167 DGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAP 226

Query: 349 RVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAM 170
           RV+YRTADDDI  SVPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR GPKL KA+
Sbjct: 227 RVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAV 286

Query: 169 KYFEERRVPCRSFLQLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKG 2
            + +ERRV      + +++ +EP   +P  + FFC+   + I+F+V+++VNAVMHKG
Sbjct: 287 DFLKERRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKG 343


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  207 bits (528), Expect = 6e-52
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 3/179 (1%)
 Frame = -1

Query: 529 DGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAP 350
           DGTCK LFTK+TAFSFK   K AV+KCNFK+EF + EI EV+Q +++S+LI+L+QLSS+P
Sbjct: 167 DGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSP 226

Query: 349 RVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAM 170
            V+YRTADDDI ++VPFDLLDD+DPWIRTTDFT  G IGR NSY IS+ PR G KL KAM
Sbjct: 227 FVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAM 286

Query: 169 KYFEERRVPC--RSFLQLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKG 2
            Y   RRV     S    L+V +EP   +P  + FFC+   + I F V+++VNAVMHKG
Sbjct: 287 DYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKG 345


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  201 bits (512), Expect = 4e-50
 Identities = 97/177 (54%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
 Frame = -1

Query: 529 DGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAP 350
           DG CK  FT++TAFSFK T + AV++C+FKLEF + +I E+KQY + S L++L+QL+SAP
Sbjct: 167 DGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAP 226

Query: 349 RVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAM 170
            V+YRTADDDI   VPFDLLDD+DPWIRTTDFTP G IGR NSY +S+ PR G KL +A+
Sbjct: 227 SVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRAL 286

Query: 169 KYFEERRVPCRSFLQLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKG 2
            +  ERRV      + L V  EP   +P  + FFC+   + + F ++++VNAVMHKG
Sbjct: 287 NFLRERRVQEDCLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKG 343


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1200

 Score =  200 bits (509), Expect = 1e-49
 Identities = 99/180 (55%), Positives = 134/180 (74%), Gaps = 4/180 (2%)
 Frame = -1

Query: 529 DGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAP 350
           DGTCK  F++ TAFS KST++ AV+KC+FK+EF + +I E+ QY   S L++L+QL+SAP
Sbjct: 167 DGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAP 226

Query: 349 RVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAM 170
            V+YRTADDDI   VPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR G KL KA+
Sbjct: 227 WVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAV 286

Query: 169 KYFEERRVPC---RSFLQLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKG 2
           KY +ERRV      +  + +++L+EP   +P  + FFC+   + I+FEV+++VNAVMHKG
Sbjct: 287 KYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKG 346


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  197 bits (502), Expect = 6e-49
 Identities = 99/179 (55%), Positives = 132/179 (73%), Gaps = 3/179 (1%)
 Frame = -1

Query: 529 DGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAP 350
           +G CKILFTK+TAFSF+  AK A++KCNFK+EF + EI E+K++K+ ++L++L+QL+S+P
Sbjct: 166 NGACKILFTKDTAFSFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSP 225

Query: 349 RVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAM 170
            VFYRTADDDI +SV FDLLDD+D WIRTTD T  G IGR N+Y IS+ PR GP   KAM
Sbjct: 226 LVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAM 285

Query: 169 KYFEERRVPCRSFL--QLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKG 2
            YF   RVP       ++L+V +EP   V   + FFC    + ISF+V+++VNAV+HKG
Sbjct: 286 AYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKG 343