BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037763
         (693 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containi...   242   4e-62
ref|XP_002884507.1| pentatricopeptide repeat-containing protein ...   204   1e-50
ref|NP_187185.2| pentatricopeptide repeat-containing protein [Ar...   203   2e-50
gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thal...   203   2e-50
ref|XP_003626292.1| Pentatricopeptide repeat-containing protein ...   183   2e-44

>ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  242 bits (618), Expect = 4e-62
 Identities = 122/228 (53%), Positives = 155/228 (67%)
 Frame = +3

Query: 6   SSQISSFLTKKLQHSPNPHISDITLSHVGLSTLLSICGREGHFRLGLSLHASIIKNYEYF 185
           +S +SS L   +  +P    S   ++ V +S LLS+CGREG+  LG SLHASIIKN+ + 
Sbjct: 18  TSPVSSPLKTLILQNPYSETSKFAINQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFL 77

Query: 186 HPMLQSNTRNVVAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXX 365
               + N RNV+ VWNSL+SMYS+ G L  A KVFD MPMKDT+SWNS IS         
Sbjct: 78  DGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIE 137

Query: 366 XXXXXXKQMRGLGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNAL 545
                 KQ+   G+++ DQA+LT VL+ACD P+  YV  M+H LV   GYE+E++VGNAL
Sbjct: 138 MGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNAL 197

Query: 546 ITNYSKCGCCESGRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
           IT+Y +CGCC SGRRVF EM   NV+TWTAVISGL+Q +F EESL+LF
Sbjct: 198 ITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLF 245



 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 2/201 (0%)
 Frame = +3

Query: 93  LSTLLSICGREGHFRLGLSLHASIIKNYEYFHPMLQSNTRNVVAVWNSLVSMYSKFGLLV 272
           L+T+L+ C +     +   +H S++  Y Y            + V N+L++ Y + G   
Sbjct: 159 LTTVLTACDKPEFCYVSKMIH-SLVFLYGY---------EREITVGNALITSYFRCGCCS 208

Query: 273 SAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCV--LS 446
           S  +VFDEM  K+ V+W ++IS                +MR      VD  SLT +  L 
Sbjct: 209 SGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRD---GPVDPNSLTYLSSLM 265

Query: 447 ACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNVIT 626
           AC     +     +H LV + G   ++ + +AL+  YSKCG  E   ++F      + ++
Sbjct: 266 ACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVS 325

Query: 627 WTAVISGLAQSEFCEESLRLF 689
            T ++ GLAQ+ F EES+++F
Sbjct: 326 MTVILVGLAQNGFEEESIQVF 346



 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 49/199 (24%), Positives = 87/199 (43%)
 Frame = +3

Query: 93  LSTLLSICGREGHFRLGLSLHASIIKNYEYFHPMLQSNTRNVVAVWNSLVSMYSKFGLLV 272
           LS+L++  G +   R G  +H  + K   +F   ++S          +L+ MYSK G L 
Sbjct: 261 LSSLMACSGLQA-IREGRQIHGLVWKLGVHFDLCIES----------ALMDMYSKCGSLE 309

Query: 273 SAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCVLSAC 452
            A K+F+     D VS   ++                 +M   GV  +D   ++ +L   
Sbjct: 310 DAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV-IDPNMISAILGVF 368

Query: 453 DNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNVITWT 632
                L +   +H L+++  +     V N LI  YSKCG  +   ++FC M   N ++W 
Sbjct: 369 GIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWN 428

Query: 633 AVISGLAQSEFCEESLRLF 689
           ++I+  A+      +L+L+
Sbjct: 429 SMIAAFARHGNGSRALQLY 447


>ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330347|gb|EFH60766.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 676

 Score =  204 bits (520), Expect = 1e-50
 Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 1/218 (0%)
 Frame = +3

Query: 39  LQHSPNPHISDITLSHVGLSTLLSICGREGHFR-LGLSLHASIIKNYEYFHPMLQSNTRN 215
           ++ SP+  +S   L+HV +S LLSICGREG F  LG  LHASI+KN E+F P+     RN
Sbjct: 29  IRQSPSYQVSTFLLNHVDMSLLLSICGREGWFPYLGPCLHASIVKNPEFFDPVDADIHRN 88

Query: 216 VVAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMR 395
            + VWNSL+S+Y K G L  A K+FDEMP++D +S N +                 K+M 
Sbjct: 89  ALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRML 148

Query: 396 GLGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCC 575
           G G F  DQA+LT VLS CD P+   V  M+H L + +GY++E+SVGN LIT+Y KCGC 
Sbjct: 149 GSGGF--DQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCS 206

Query: 576 ESGRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
            SGR VF EM   NVITWTAVISGL ++E  E+ LRLF
Sbjct: 207 VSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLF 244



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
 Frame = +3

Query: 93  LSTLLSICGREGHFRLGLSLHA-SIIKNYEYFHPMLQSNTRNVVAVWNSLVSMYSKFGLL 269
           L+ +LS+C       +   +HA +I+  Y+             ++V N L++ Y K G  
Sbjct: 158 LTIVLSVCDTPEFCLVTKMIHALAILSGYD-----------KEISVGNKLITSYFKCGCS 206

Query: 270 VSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCVLSA 449
           VS   VF EM  ++ ++W ++IS                 MR  G+   +  +    L+A
Sbjct: 207 VSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRR-GLVHPNSVTYLSALAA 265

Query: 450 CDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNVITW 629
           C    M+     +H L+ + G E E+ + +AL+  YSKCG  E   ++F      + ++ 
Sbjct: 266 CSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSM 325

Query: 630 TAVISGLAQSEFCEESLRLF 689
           T ++ GLAQ+   EE+++ F
Sbjct: 326 TVILVGLAQNGSEEEAIQFF 345



 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 39/157 (24%), Positives = 70/157 (44%)
 Frame = +3

Query: 219 VAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRG 398
           + + ++L+ MYSK G +  A K+F+     D VS   ++                 +M  
Sbjct: 291 LCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQ 350

Query: 399 LGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCE 578
            GV  +D   ++ +L      + L +   +H LV++  +     V N LI  YSKCG   
Sbjct: 351 AGV-EIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLT 409

Query: 579 SGRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
             + VF  M   N ++W ++I+  A+      +L+L+
Sbjct: 410 DSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLY 446


>ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g05340 gi|332640702|gb|AEE74223.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  203 bits (517), Expect = 2e-50
 Identities = 112/218 (51%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
 Frame = +3

Query: 39  LQHSPNPHISDITLSHVGLSTLLSICGREGHF-RLGLSLHASIIKNYEYFHPMLQSNTRN 215
           ++ SPN  +S   L+HV +S LLSICGREG F  LG  LHASIIKN E+F P+     RN
Sbjct: 29  IRQSPNYQVSTFLLNHVDMSLLLSICGREGWFPHLGPCLHASIIKNPEFFEPVDADIHRN 88

Query: 216 VVAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMR 395
            + VWNSL+S+Y+K G LV A K+FDEMPM+D +S N +                 K+M 
Sbjct: 89  ALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRML 148

Query: 396 GLGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCC 575
           G G F  D A+LT VLS CD P+   V  M+H L + +GY++E+SVGN LIT+Y KCGC 
Sbjct: 149 GSGGF--DHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCS 206

Query: 576 ESGRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
            SGR VF  M   NVIT TAVISGL ++E  E+ LRLF
Sbjct: 207 VSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLF 244



 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 1/203 (0%)
 Frame = +3

Query: 84  HVGLSTLLSICGREGHFRLGLSLHA-SIIKNYEYFHPMLQSNTRNVVAVWNSLVSMYSKF 260
           H  L+ +LS+C       +   +HA +I+  Y+             ++V N L++ Y K 
Sbjct: 155 HATLTIVLSVCDTPEFCLVTKMIHALAILSGYD-----------KEISVGNKLITSYFKC 203

Query: 261 GLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCV 440
           G  VS   VFD M  ++ ++  ++IS                 MR  G+   +  +    
Sbjct: 204 GCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRR-GLVHPNSVTYLSA 262

Query: 441 LSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNV 620
           L+AC     +     +H L+ + G E E+ + +AL+  YSKCG  E    +F      + 
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322

Query: 621 ITWTAVISGLAQSEFCEESLRLF 689
           ++ T ++ GLAQ+   EE+++ F
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFF 345


>gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  203 bits (517), Expect = 2e-50
 Identities = 112/218 (51%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
 Frame = +3

Query: 39  LQHSPNPHISDITLSHVGLSTLLSICGREGHF-RLGLSLHASIIKNYEYFHPMLQSNTRN 215
           ++ SPN  +S   L+HV +S LLSICGREG F  LG  LHASIIKN E+F P+     RN
Sbjct: 29  IRQSPNYQVSTFLLNHVDMSLLLSICGREGWFPHLGPCLHASIIKNPEFFEPVDADIHRN 88

Query: 216 VVAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMR 395
            + VWNSL+S+Y+K G LV A K+FDEMPM+D +S N +                 K+M 
Sbjct: 89  ALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRML 148

Query: 396 GLGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCC 575
           G G F  D A+LT VLS CD P+   V  M+H L + +GY++E+SVGN LIT+Y KCGC 
Sbjct: 149 GSGGF--DHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCS 206

Query: 576 ESGRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
            SGR VF  M   NVIT TAVISGL ++E  E+ LRLF
Sbjct: 207 VSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLF 244



 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 1/203 (0%)
 Frame = +3

Query: 84  HVGLSTLLSICGREGHFRLGLSLHA-SIIKNYEYFHPMLQSNTRNVVAVWNSLVSMYSKF 260
           H  L+ +LS+C       +   +HA +I+  Y+             ++V N L++ Y K 
Sbjct: 155 HATLTIVLSVCDTPEFCLVTKMIHALAILSGYD-----------KEISVGNKLITSYFKC 203

Query: 261 GLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCV 440
           G  VS   VFD M  ++ ++  ++IS                 MR  G+   +  +    
Sbjct: 204 GCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRR-GLVHPNSVTYLSA 262

Query: 441 LSACDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNV 620
           L+AC     +     +H L+ + G E E+ + +AL+  YSKCG  E    +F      + 
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322

Query: 621 ITWTAVISGLAQSEFCEESLRLF 689
           ++ T ++ GLAQ+   EE+++ F
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFF 345


>ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355501307|gb|AES82510.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  183 bits (465), Expect = 2e-44
 Identities = 103/216 (47%), Positives = 134/216 (62%), Gaps = 5/216 (2%)
 Frame = +3

Query: 57  PHISDITLSHVGLSTLLSICGREGHFRLGLSLHASIIKNYEYFHPMLQSNTRNVVAVWNS 236
           P  +   L+H  L++LL++CGR+ +  LG S+HA IIK    F      + RN + +WNS
Sbjct: 25  PSTTKSLLNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFD--FDGSQRNALFIWNS 82

Query: 237 LVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLG--VF 410
           L+SMYSK G   +A  VFD MP++DTVSWN+MIS               KQM        
Sbjct: 83  LLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCC 142

Query: 411 RVDQASLTCVLSACDNPDM---LYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCES 581
           R D+A+LT +LS CD   +     V  M+H LV   G+E+E++VGNALIT+Y KC C   
Sbjct: 143 RFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQ 202

Query: 582 GRRVFCEMFVTNVITWTAVISGLAQSEFCEESLRLF 689
           GR+VF EM   NV+TWTAVISGLAQ+EF E+SLRLF
Sbjct: 203 GRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLF 238



 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
 Frame = +3

Query: 93  LSTLLSICGREGHFRLGLSLHASIIKNYEYFHPML-QSNTRNVVAVWNSLVSMYSKFGLL 269
           L+T+LS C      RLG+S   +     +  H ++        + V N+L++ Y K    
Sbjct: 149 LTTMLSGCDG---LRLGISTSVT-----QMIHGLVFVGGFEREITVGNALITSYFKCECF 200

Query: 270 VSAAKVFDEMPMKDTVSWNSMISXXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCVLSA 449
               KVFDEM  ++ V+W ++IS                QMR  G    +  +    L A
Sbjct: 201 SQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMA 260

Query: 450 CDNPDMLYVCMMMHCLVLRNGYEQEVSVGNALITNYSKCGCCESGRRVFCEMFVTNVITW 629
           C    +L     +H L+ + G + ++ + +AL+  YSKCG  ++  ++F      + ++ 
Sbjct: 261 CSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSL 320

Query: 630 TAVISGLAQSEFCEESLRLF 689
           T ++   AQ+ F EE++++F
Sbjct: 321 TVILVAFAQNGFEEEAIQIF 340



 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
 Frame = +3

Query: 162 IIKNYEYFHPML-QSNTRNVVAVWNSLVSMYSKFGLLVSAAKVFDEMPMKDTVSWNSMIS 338
           ++++ +  H +L +   ++ + + ++L+ +YSK G L +A ++F+     D VS   ++ 
Sbjct: 266 VLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVILV 325

Query: 339 XXXXXXXXXXXXXXXKQMRGLGVFRVDQASLTCVLSACDNPDMLYVCMMMHCLVLRNGYE 518
                           +M  LG+  VD   ++ VL        L +   +H L+++  + 
Sbjct: 326 AFAQNGFEEEAIQIFTKMVALGM-EVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFC 384

Query: 519 QEVSVGNALITNYSKCGCCESGRRVFCEMFVTNVITWTAVISGLAQ 656
           +   VGN L+  YSKCG       VF +M   N ++W +VI+  A+
Sbjct: 385 ENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFAR 430