BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037718
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35029.3| unnamed protein product [Vitis vinifera]              124   8e-27
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat...   124   8e-27
ref|NP_189505.2| pentatricopeptide repeat-containing protein [Ar...   121   5e-26
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar...   119   3e-25
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ...   119   3e-25

>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/94 (63%), Positives = 70/94 (74%)
 Frame = +2

Query: 17  RKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGLTACAHS 196
           RK+FDEI   DV QWNV +NG +R G+  EAL+AFR+ML SGVE DE+C+ T L  CA  
Sbjct: 161 RKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQL 220

Query: 197 GALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYA 298
           GAL+QG WIHEYV KR     DVF+GTALVDMYA
Sbjct: 221 GALQQGKWIHEYVTKRKWLEADVFIGTALVDMYA 254


>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/94 (63%), Positives = 70/94 (74%)
 Frame = +2

Query: 17  RKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGLTACAHS 196
           RK+FDEI   DV QWNV +NG +R G+  EAL+AFR+ML SGVE DE+C+ T L  CA  
Sbjct: 161 RKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQL 220

Query: 197 GALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYA 298
           GAL+QG WIHEYV KR     DVF+GTALVDMYA
Sbjct: 221 GALQQGKWIHEYVTKRKWLEADVFIGTALVDMYA 254


>ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g28640 gi|9294278|dbj|BAB02180.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332643948|gb|AEE77469.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  121 bits (304), Expect = 5e-26
 Identities = 59/98 (60%), Positives = 71/98 (72%)
 Frame = +2

Query: 5   LVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGLTA 184
           L++ RKVFDEI + DV +W+V MNG +R G+  E L  FR+ML  G+E DE+ V T LTA
Sbjct: 168 LLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTA 227

Query: 185 CAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYA 298
           CA  GAL QG WIHE+VKK+     DVFVGTALVDMYA
Sbjct: 228 CAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYA 265


>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis
           thaliana] gi|24030460|gb|AAN41382.1| unknown protein
           [Arabidopsis thaliana] gi|332643950|gb|AEE77471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 504

 Score =  119 bits (298), Expect = 3e-25
 Identities = 58/98 (59%), Positives = 70/98 (71%)
 Frame = +2

Query: 5   LVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGLTA 184
           L + RKVFDEI + DV +W+V MNG +R G+  E L  F++ML  G+E DE+ V T LTA
Sbjct: 168 LFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTA 227

Query: 185 CAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYA 298
           CA  GAL QG WIHE+VKK+     DVFVGTALVDMYA
Sbjct: 228 CAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYA 265


>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322958|gb|EFH53379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 399

 Score =  119 bits (298), Expect = 3e-25
 Identities = 59/98 (60%), Positives = 70/98 (71%)
 Frame = +2

Query: 5   LVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGLTA 184
           L++  KVFDEI + DV +W+V MNG +R G+  E L  FR+ML  GVE DE+ V T LTA
Sbjct: 63  LLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTALTA 122

Query: 185 CAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYA 298
           CA  GAL QG WIHE+VKK+     DVFVGTALVDMYA
Sbjct: 123 CAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYA 160