BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037649
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              147   1e-33
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   141   5e-32
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]   139   2e-31
emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera]   131   5e-29
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]              130   8e-29

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  147 bits (370), Expect = 1e-33
 Identities = 67/98 (68%), Positives = 81/98 (82%)
 Frame = +1

Query: 70  GEYTKRVFQNFLSNHGISFRSSCPDHPKQNGLPERKHRHIVETGLTLLAHAHMPSTYWVD 249
           GEY   +FQ++LS +GI  R SCP HP+QNGL ERKHRHIV+TGLTLLAHAHMPSTYWVD
Sbjct: 528 GEYKSHIFQSYLSTNGIFQRFSCPKHPEQNGLAERKHRHIVDTGLTLLAHAHMPSTYWVD 587

Query: 250 AFNTALYLINRLPTRVLNNITPYEKLF*KTAVYDCLRV 363
           +FNTA+Y+INRLP+RVLN  +PYE+LF +   Y  L+V
Sbjct: 588 SFNTAVYIINRLPSRVLNYASPYEQLFHRVPQYHSLKV 625


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score =  141 bits (356), Expect = 5e-32
 Identities = 67/121 (55%), Positives = 85/121 (70%)
 Frame = +1

Query: 1   VRFKLHVENLFSTKIKAFQSDGGGEYTKRVFQNFLSNHGISFRSSCPDHPKQNGLPERKH 180
           + F+  VEN  +TKIK FQSDGGGE+     +  LS HGI  R SCP  P+QNGL ERKH
Sbjct: 561 ISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKH 620

Query: 181 RHIVETGLTLLAHAHMPSTYWVDAFNTALYLINRLPTRVLNNITPYEKLF*KTAVYDCLR 360
           RH+VE GL++L H+H P  +WV++F TA Y+INRLP+ VL N++PYE LF +   Y  LR
Sbjct: 621 RHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLR 680

Query: 361 V 363
           V
Sbjct: 681 V 681


>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
          Length = 1453

 Score =  139 bits (351), Expect = 2e-31
 Identities = 66/117 (56%), Positives = 83/117 (70%)
 Frame = +1

Query: 1   VRFKLHVENLFSTKIKAFQSDGGGEYTKRVFQNFLSNHGISFRSSCPDHPKQNGLPERKH 180
           ++F+  VEN +STKIK FQSDGG E+T   FQ+ L   GI  + SCP  P QNG  ERKH
Sbjct: 518 LQFQKLVENQYSTKIKIFQSDGGAEFTSNRFQSHLQQFGIHHQMSCPYTPSQNGRAERKH 577

Query: 181 RHIVETGLTLLAHAHMPSTYWVDAFNTALYLINRLPTRVLNNITPYEKLF*KTAVYD 351
           RH+ ETGL LL H+H+P  YWVDAF+TA Y+INRLP  VL  ++P+E LF K+  Y+
Sbjct: 578 RHVTETGLALLFHSHVPPRYWVDAFSTATYIINRLPLPVLGGLSPFEVLFGKSPNYE 634


>emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera]
          Length = 1319

 Score =  131 bits (330), Expect = 5e-29
 Identities = 68/120 (56%), Positives = 80/120 (66%)
 Frame = +1

Query: 4   RFKLHVENLFSTKIKAFQSDGGGEYTKRVFQNFLSNHGISFRSSCPDHPKQNGLPERKHR 183
           +FKL VEN F  KIK  QSD GGE+  R F+ FL   GI  R SCP +  QNG  ERKHR
Sbjct: 534 KFKLQVENQFDAKIKCLQSDNGGEF--RSFKTFLQQTGIFHRFSCPYNSAQNGRVERKHR 591

Query: 184 HIVETGLTLLAHAHMPSTYWVDAFNTALYLINRLPTRVLNNITPYEKLF*KTAVYDCLRV 363
           H+VETGL LLAHA +P  +W  AF TA +LINR+P++VL N +PY  LF K   Y  LRV
Sbjct: 592 HVVETGLALLAHASLPMEFWQYAFQTATFLINRMPSKVLQNNSPYFTLFQKVPNYKSLRV 651


>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score =  130 bits (328), Expect = 8e-29
 Identities = 68/121 (56%), Positives = 82/121 (67%)
 Frame = +1

Query: 1    VRFKLHVENLFSTKIKAFQSDGGGEYTKRVFQNFLSNHGISFRSSCPDHPKQNGLPERKH 180
            V FK  VEN F TKI+   SD GGE+     + FL  HGIS  +S P  P+ NG+ ERKH
Sbjct: 665  VAFKALVENRFQTKIRTLYSDNGGEFI--ALRQFLLTHGISHLTSLPHTPEHNGIAERKH 722

Query: 181  RHIVETGLTLLAHAHMPSTYWVDAFNTALYLINRLPTRVLNNITPYEKLF*KTAVYDCLR 360
            RHI+ETGLTLL  A +P++YW  AF TA+YLINRLP+ VLNN +PY KLF  +  Y  LR
Sbjct: 723  RHILETGLTLLTQASIPTSYWTYAFGTAVYLINRLPSSVLNNESPYSKLFKTSPNYLKLR 782

Query: 361  V 363
            V
Sbjct: 783  V 783