BLASTX nr result
ID: Coptis25_contig00037621
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00037621
(411 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 163 1e-38
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 162 2e-38
emb|CBI19765.3| unnamed protein product [Vitis vinifera] 162 2e-38
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,... 160 8e-38
ref|XP_004170416.1| PREDICTED: LOW QUALITY PROTEIN: agglutinin-l... 160 1e-37
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Cucumis sativus]
Length = 1463
Score = 163 bits (413), Expect = 1e-38
Identities = 72/104 (69%), Positives = 89/104 (85%)
Frame = -2
Query: 410 SGEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFT 231
SG ++K DYPHEV+TC+ GYYG I +D+R +A+KSLTF+TSRGK+GP+GEE+G+FFT
Sbjct: 1360 SGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAVKSLTFHTSRGKFGPFGEEVGSFFT 1419
Query: 230 STTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSILQKIF 99
STTTEGKV+GFHGRSSLYLDAIGVHMQHWLG R ++S K+F
Sbjct: 1420 STTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRATRSSFFKLF 1463
Score = 100 bits (249), Expect = 1e-19
Identities = 49/100 (49%), Positives = 71/100 (71%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T +K D+P E +T + G+YGS D++ ++SLTF +++ KYGPYG E GT F+
Sbjct: 937 GTKTDTVKLDFPDEYLTMIRGHYGSFVSFDKV-FVRSLTFMSNKKKYGPYGVEQGTIFSF 995
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSILQ 108
TTEGK++GFHGRS LYLDAIGV+++ + PSK+++Q
Sbjct: 996 PTTEGKIVGFHGRSGLYLDAIGVYLKP-MAIQSPSKAMIQ 1034
Score = 92.8 bits (229), Expect = 3e-17
Identities = 42/80 (52%), Positives = 59/80 (73%)
Frame = -2
Query: 392 KIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTSTTTEG 213
K+ FDYP+E++T V G+YG + IKSLTF+T++ KYGP+GE GT F++ EG
Sbjct: 1170 KVIFDYPYEILTHVTGHYGPVMYMGP-NVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEG 1228
Query: 212 KVLGFHGRSSLYLDAIGVHM 153
K++GFHGR L+LDA+GVH+
Sbjct: 1229 KIVGFHGRKGLFLDALGVHI 1248
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Vitis vinifera]
Length = 1545
Score = 162 bits (411), Expect = 2e-38
Identities = 76/103 (73%), Positives = 86/103 (83%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T ++K +YPHEVV+C+CGYYG IS ++ AIKSLTFYTSRGKYGP+GEEIGT+FTS
Sbjct: 1442 GTTTHRVKLEYPHEVVSCICGYYGPISINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTS 1501
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSILQKIF 99
T TEGKV+GFHGRSSLYLDAIGVHMQHWLG R K L KIF
Sbjct: 1502 TRTEGKVVGFHGRSSLYLDAIGVHMQHWLGDQRTLKPNLFKIF 1544
Score = 90.5 bits (223), Expect = 1e-16
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G KI DYP+EV+T + GYY IKSLTF+T++ KYGP+GEE GT F+S
Sbjct: 1238 GFRNDKIVIDYPYEVLTHITGYYAPTMVMGP-NIIKSLTFHTTKTKYGPFGEEQGTPFSS 1296
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHM 153
EG ++GFHGR+ L++DAIGVHM
Sbjct: 1297 NIKEGVIVGFHGRTGLFIDAIGVHM 1321
Score = 82.4 bits (202), Expect = 3e-14
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T ++K D P E +T + G+YGS+ + ++SLT +++ YGP+G E G +F+
Sbjct: 1007 GTRTNRVKLDSPDEFLTSIHGHYGSLLERGPV-FVRSLTLESNKRTYGPFGIEQGIYFSL 1065
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQ 150
TT GK++GFHG+S YLDAIGVH++
Sbjct: 1066 PTTGGKIIGFHGKSGWYLDAIGVHLK 1091
>emb|CBI19765.3| unnamed protein product [Vitis vinifera]
Length = 670
Score = 162 bits (411), Expect = 2e-38
Identities = 76/103 (73%), Positives = 86/103 (83%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T ++K +YPHEVV+C+CGYYG IS ++ AIKSLTFYTSRGKYGP+GEEIGT+FTS
Sbjct: 567 GTTTHRVKLEYPHEVVSCICGYYGPISINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTS 626
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSILQKIF 99
T TEGKV+GFHGRSSLYLDAIGVHMQHWLG R K L KIF
Sbjct: 627 TRTEGKVVGFHGRSSLYLDAIGVHMQHWLGDQRTLKPNLFKIF 669
Score = 90.5 bits (223), Expect = 1e-16
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G KI DYP+EV+T + GYY IKSLTF+T++ KYGP+GEE GT F+S
Sbjct: 363 GFRNDKIVIDYPYEVLTHITGYYAPTMVMGP-NIIKSLTFHTTKTKYGPFGEEQGTPFSS 421
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHM 153
EG ++GFHGR+ L++DAIGVHM
Sbjct: 422 NIKEGVIVGFHGRTGLFIDAIGVHM 446
Score = 82.4 bits (202), Expect = 3e-14
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T ++K D P E +T + G+YGS+ + ++SLT +++ YGP+G E G +F+
Sbjct: 97 GTRTNRVKLDSPDEFLTSIHGHYGSLLERGPV-FVRSLTLESNKRTYGPFGIEQGIYFSL 155
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQ 150
TT GK++GFHG+S YLDAIGVH++
Sbjct: 156 PTTGGKIIGFHGKSGWYLDAIGVHLK 181
>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1218
Score = 160 bits (406), Expect = 8e-38
Identities = 74/103 (71%), Positives = 85/103 (82%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G AT ++K +YPHEV+T + GYYG SRD+R +KSLTFYTSRG+YGP+GEEIGTFFTS
Sbjct: 1115 GTATNRVKLEYPHEVLTRISGYYGPASRDERPTVVKSLTFYTSRGQYGPFGEEIGTFFTS 1174
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSILQKIF 99
TTTEGKV+GFHGR YLDAIGVHMQHWLG R S+S L KIF
Sbjct: 1175 TTTEGKVVGFHGRCGAYLDAIGVHMQHWLGNNRTSRSSLFKIF 1217
Score = 89.7 bits (221), Expect = 2e-16
Identities = 45/99 (45%), Positives = 66/99 (66%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T KI FDYP+E++T + G YG + IKSLTFYT++GK+GP+G+E G F++
Sbjct: 919 GFKTEKITFDYPYEILTHISGTYGPLMFMGP-NIIKSLTFYTNKGKHGPFGDEQGPSFST 977
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKSIL 111
GK++GFHG+ L+LDAIGV++ G +P++ L
Sbjct: 978 KPNGGKIVGFHGKEGLFLDAIGVNLME--GKVKPARHYL 1014
Score = 82.0 bits (201), Expect = 5e-14
Identities = 35/86 (40%), Positives = 60/86 (69%)
Frame = -2
Query: 407 GEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTS 228
G T K+K DYP E + V G+YGS+++ + ++SLTF +++ YGP+G E GT+F+
Sbjct: 689 GNRTDKVKLDYPDEYLASVSGHYGSLNQWGPV-FVRSLTFQSNKRTYGPFGVEQGTYFSF 747
Query: 227 TTTEGKVLGFHGRSSLYLDAIGVHMQ 150
T G+++GFHG+ ++DAIG++++
Sbjct: 748 PMTGGRIVGFHGKGGYFVDAIGIYLK 773
>ref|XP_004170416.1| PREDICTED: LOW QUALITY PROTEIN: agglutinin-like, partial [Cucumis
sativus]
Length = 348
Score = 160 bits (405), Expect = 1e-37
Identities = 70/98 (71%), Positives = 86/98 (87%)
Frame = -2
Query: 410 SGEATTKIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFT 231
SG ++K DYPHEV+TC+ GYYG I +D+R +A+KSLTF+TSRGK+GP+GEE+G+FFT
Sbjct: 239 SGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAVKSLTFHTSRGKFGPFGEEVGSFFT 298
Query: 230 STTTEGKVLGFHGRSSLYLDAIGVHMQHWLGCGRPSKS 117
STTTEGKV+GFHGRSSLYLDAIGVHMQHWLG R ++S
Sbjct: 299 STTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRATRS 336
Score = 91.7 bits (226), Expect = 6e-17
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = -2
Query: 392 KIKFDYPHEVVTCVCGYYGSISRDDRLKAIKSLTFYTSRGKYGPYGEEIGTFFTSTTTEG 213
K+ FDYP+E++T V G+YG + IKSLTF+T++ KYGP+GE GT F++ +G
Sbjct: 49 KVIFDYPYEILTHVTGHYGPVMYMGP-NVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKDG 107
Query: 212 KVLGFHGRSSLYLDAIGVHM 153
K++GFHGR L+LDA+GVH+
Sbjct: 108 KIVGFHGRKGLFLDALGVHI 127