BLASTX nr result

ID: Coptis25_contig00037581 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037581
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               103   1e-24
ref|XP_004172502.1| PREDICTED: uncharacterized mitochondrial pro...    96   5e-20
ref|XP_002282909.2| PREDICTED: glutamate receptor 2.7-like [Viti...    98   6e-19
emb|CAN80320.1| hypothetical protein VITISV_034560 [Vitis vinifera]    98   6e-19
emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]    98   6e-19

>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 46/61 (75%), Positives = 52/61 (85%)
 Frame = +1

Query: 1    YGAMASTTAEIVWIRWLLEDMGVPLIAPTPMYCDNKSAIQLAHNSVFHERTKHIEIDCHI 180
            Y AMASTT EIVW RWLL DMG+     TPMYCDN+S+IQ+AHNSVFHERTKHIEIDCH+
Sbjct: 1274 YCAMASTTKEIVWSRWLLADMGISFSHLTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHL 1333

Query: 181  S 183
            +
Sbjct: 1334 T 1334



 Score = 35.0 bits (79), Expect(2) = 1e-24
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 177  YLMCHHFQSGTLTLPFLSSSLQLTDF 254
            +L  HH + GT+ LPF+ SSLQ+ DF
Sbjct: 1332 HLTRHHLKHGTIALPFVPSSLQIADF 1357


>ref|XP_004172502.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like,
           partial [Cucumis sativus]
          Length = 296

 Score = 95.5 bits (236), Expect(2) = 5e-20
 Identities = 39/62 (62%), Positives = 49/62 (79%)
 Frame = +1

Query: 1   YGAMASTTAEIVWIRWLLEDMGVPLIAPTPMYCDNKSAIQLAHNSVFHERTKHIEIDCHI 180
           Y A+A  T+E++W+RWLL DMG P  + T ++CDN+SAIQ+AHN VFHERTKHIE DCH 
Sbjct: 188 YHALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVFHERTKHIENDCHF 247

Query: 181 SC 186
            C
Sbjct: 248 VC 249



 Score = 26.9 bits (58), Expect(2) = 5e-20
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 177 YLMCHHFQSGTLTLPFLSSSLQLTDF----LRSPTPFQIIVLQKASSTL 311
           + +CHH QS TL L  +S+  Q  D     L SP    ++   K  STL
Sbjct: 246 HFVCHHLQSNTLHLQSISTIDQPADIFNKALHSPRFTLLLHKLKVVSTL 294


>ref|XP_002282909.2| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera]
          Length = 1452

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 40/59 (67%), Positives = 51/59 (86%)
 Frame = +1

Query: 1   YGAMASTTAEIVWIRWLLEDMGVPLIAPTPMYCDNKSAIQLAHNSVFHERTKHIEIDCH 177
           Y A+A TT+E++W+RWLL+D+GV   + TP+YCDN+SAI +AHN VFHERTKHIEIDCH
Sbjct: 504 YRALADTTSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEIDCH 562


>emb|CAN80320.1| hypothetical protein VITISV_034560 [Vitis vinifera]
          Length = 1261

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 40/59 (67%), Positives = 52/59 (88%)
 Frame = +1

Query: 1    YGAMASTTAEIVWIRWLLEDMGVPLIAPTPMYCDNKSAIQLAHNSVFHERTKHIEIDCH 177
            Y A+A+TT+E+ W+RWLL+D+GV   + TP+YCDN+SAI +AHN+VFHERTKHIEIDCH
Sbjct: 1165 YRALANTTSELFWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNNVFHERTKHIEIDCH 1223


>emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]
          Length = 1287

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 40/59 (67%), Positives = 51/59 (86%)
 Frame = +1

Query: 1    YGAMASTTAEIVWIRWLLEDMGVPLIAPTPMYCDNKSAIQLAHNSVFHERTKHIEIDCH 177
            Y A+A TT+E++W+RWLL+D+GV   + TP+YCDN+SAI +AHN VFHERTKHIEIDCH
Sbjct: 1180 YRALADTTSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEIDCH 1238


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