BLASTX nr result
ID: Coptis25_contig00037519
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00037519
(334 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 70 5e-19
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 70 5e-19
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 67 4e-18
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 67 4e-18
gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/R... 67 5e-18
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 70.5 bits (171), Expect(2) = 5e-19
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = -1
Query: 259 GVLEHGQCFIQVSTPTLENCFFEHGPEFCKTNKNIKVMWLLLGI------HVSIREIFAF 98
G LE GQCFIQVS+P+LENCF +HGP+F KN++V+ L+ I H I
Sbjct: 774 GELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 97 WKL*MHHHLVDCLVFPQTQTR 35
+ HHL DCLVFPQ R
Sbjct: 834 VDVPGLHHLYDCLVFPQKGDR 854
Score = 48.5 bits (114), Expect(2) = 5e-19
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 333 SIKVFQLGDLRTKARIFVPLRRWLMGCLN 247
SI+ QLGDLR KARIFVP RWLMGCL+
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLD 771
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/60 (56%), Positives = 39/60 (65%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 VVIARNPCLHPGDIRILEAVDAPPSC*LLSF--------SPNTDEASGS----DLYFVTW 3
VVIA+NPCLHPGD+RILEAVD P L P+++EASGS DLYFVTW
Sbjct: 815 VVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTW 874
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 70.5 bits (171), Expect(2) = 5e-19
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = -1
Query: 259 GVLEHGQCFIQVSTPTLENCFFEHGPEFCKTNKNIKVMWLLLGI------HVSIREIFAF 98
G LE GQCFIQVS+P+LENCF +HGP+F KN++V+ L+ I H I
Sbjct: 774 GELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 97 WKL*MHHHLVDCLVFPQTQTR 35
+ HHL DCLVFPQ R
Sbjct: 834 VDVPGLHHLYDCLVFPQKGDR 854
Score = 48.5 bits (114), Expect(2) = 5e-19
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 333 SIKVFQLGDLRTKARIFVPLRRWLMGCLN 247
SI+ QLGDLR KARIFVP RWLMGCL+
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLD 771
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/60 (56%), Positives = 39/60 (65%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 VVIARNPCLHPGDIRILEAVDAPPSC*LLSF--------SPNTDEASGS----DLYFVTW 3
VVIA+NPCLHPGD+RILEAVD P L P+++EASGS DLYFVTW
Sbjct: 815 VVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTW 874
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 67.4 bits (163), Expect(2) = 4e-18
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = -1
Query: 259 GVLEHGQCFIQVSTPTLENCFFEHGPEFCKTNKNIKVMWLLLGI------HVSIREIFAF 98
G LE GQCFIQVS+P+LENCF +HGP+F KN++V+ L+ I H I
Sbjct: 774 GELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 97 WKL*MHHHLVDCLVFPQTQTR 35
+ HL DCLVFPQ R
Sbjct: 834 VDVPSLSHLYDCLVFPQKGDR 854
Score = 48.5 bits (114), Expect(2) = 4e-18
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 333 SIKVFQLGDLRTKARIFVPLRRWLMGCLN 247
SI+ QLGDLR KARIFVP RWLMGCL+
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLD 771
Score = 61.2 bits (147), Expect = 8e-08
Identities = 34/60 (56%), Positives = 39/60 (65%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 VVIARNPCLHPGDIRILEAVDAPPSC*LLSF--------SPNTDEASGS----DLYFVTW 3
VVIA+NPCLHPGD+RILEAVD P L P+++EASGS DLYFVTW
Sbjct: 815 VVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTW 874
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 67.4 bits (163), Expect(2) = 4e-18
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = -1
Query: 259 GVLEHGQCFIQVSTPTLENCFFEHGPEFCKTNKNIKVMWLLLGI------HVSIREIFAF 98
G LE GQCFIQVS+P+LENCF +HGP+F KN++V+ L+ I H I
Sbjct: 774 GELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 97 WKL*MHHHLVDCLVFPQTQTR 35
+ HL DCLVFPQ R
Sbjct: 834 VDVPSLSHLYDCLVFPQKGDR 854
Score = 48.5 bits (114), Expect(2) = 4e-18
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 333 SIKVFQLGDLRTKARIFVPLRRWLMGCLN 247
SI+ QLGDLR KARIFVP RWLMGCL+
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLD 771
Score = 61.2 bits (147), Expect = 8e-08
Identities = 34/60 (56%), Positives = 39/60 (65%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 VVIARNPCLHPGDIRILEAVDAPPSC*LLSF--------SPNTDEASGS----DLYFVTW 3
VVIA+NPCLHPGD+RILEAVD P L P+++EASGS DLYFVTW
Sbjct: 815 VVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTW 874
>gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 67.4 bits (163), Expect(2) = 5e-18
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = -1
Query: 259 GVLEHGQCFIQVSTPTLENCFFEHGPEFCKTNKNIKVMWLLLGI------HVSIREIFAF 98
G LE GQCFIQVS+P+LE+CF +HGP F KN++V+ L+ I H I
Sbjct: 71 GELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILEA 130
Query: 97 WKL*MHHHLVDCLVFPQTQTR 35
+ HHL DCLVFPQ R
Sbjct: 131 VDVPGLHHLYDCLVFPQKGDR 151
Score = 48.5 bits (114), Expect(2) = 5e-18
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 333 SIKVFQLGDLRTKARIFVPLRRWLMGCLN 247
SI+ QLGDLR KARIFVP RWLMGCL+
Sbjct: 40 SIRASQLGDLRNKARIFVPSGRWLMGCLD 68
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 12/60 (20%)
Frame = -3
Query: 146 VVIARNPCLHPGDIRILEAVDAPPSC*LLSF--------SPNTDEASGS----DLYFVTW 3
V+IA+NPCLHPGD+RILEAVD P L P+ D+ASGS DLYFVTW
Sbjct: 112 VIIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTW 171