BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037514
         (670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    83   6e-14
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    79   6e-13
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    79   8e-13
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   3e-12
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    73   4e-11

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 82.8 bits (203), Expect = 6e-14
 Identities = 34/78 (43%), Positives = 51/78 (65%)
 Frame = -2

Query: 387 MKILSWNCRGCGNPATIRHLKNLLLSHNPDILFLSETKSNSNHMSYILHHLSYSHFFTVE 208
           M+ILSWNC+G GN  T+RHL+ +   + P+++FL ETK   N++  ++ HL +    TVE
Sbjct: 1   MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 207 PKNTAGGLCIFWKDGVNL 154
           P   +GGL + WKD V +
Sbjct: 61  PIGKSGGLALMWKDSVQI 78


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 37/74 (50%), Positives = 47/74 (63%)
 Frame = -2

Query: 387 MKILSWNCRGCGNPATIRHLKNLLLSHNPDILFLSETKSNSNHMSYILHHLSYSHFFTVE 208
           MKIL WNC+G GNP T+R L+ L+ S+ PD LF+SETK   N +      L +S  F V 
Sbjct: 1   MKILCWNCQGMGNPWTVRQLRRLMASNTPDSLFMSETKVTKNIVEQKKESLGFSGAFGVS 60

Query: 207 PKNTAGGLCIFWKD 166
               AGGLC+FWK+
Sbjct: 61  CVGRAGGLCMFWKE 74


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 79.0 bits (193), Expect = 8e-13
 Identities = 35/76 (46%), Positives = 49/76 (64%)
 Frame = -2

Query: 381 ILSWNCRGCGNPATIRHLKNLLLSHNPDILFLSETKSNSNHMSYILHHLSYSHFFTVEPK 202
           ++SWNC+G  NP TIR+LK +   H PDILFL ETK++ + +  +   L Y    TVEP+
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61

Query: 201 NTAGGLCIFWKDGVNL 154
             +GGL IFWK  + +
Sbjct: 62  GRSGGLAIFWKSHLEI 77


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = -2

Query: 387 MKILSWNCRGCGNPATIRHLKNLLLSHNPDILFLSETKSNSNHMSYILHHLSYSHFFTVE 208
           M IL WNCRG GNP T+R L+     + PDI+FLSET  N      +   L +++ F V 
Sbjct: 1   MNILCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTESEALKSRLGFANAFGVS 60

Query: 207 PKNTAGGLCIFWKD 166
            +  AGGLC+FW++
Sbjct: 61  SRGRAGGLCVFWRE 74


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|62733115|gb|AAX95232.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 1324

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 34/78 (43%), Positives = 47/78 (60%)
 Frame = -2

Query: 387 MKILSWNCRGCGNPATIRHLKNLLLSHNPDILFLSETKSNSNHMSYILHHLSYSHFFTVE 208
           MKI++WNCRG GN  T+R L NL    +PDILFLS TK ++N +      L   +    +
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKD 507

Query: 207 PKNTAGGLCIFWKDGVNL 154
            +  +GGL +FWK  +NL
Sbjct: 508 CQGKSGGLAVFWKKEINL 525