BLASTX nr result

ID: Coptis25_contig00037508 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037508
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535700.1| PREDICTED: E3 ubiquitin-protein ligase PUB22...   103   1e-20
emb|CAN82979.1| hypothetical protein VITISV_023329 [Vitis vinifera]   102   2e-20
ref|XP_002298264.1| predicted protein [Populus trichocarpa] gi|2...   102   4e-20
ref|XP_003520716.1| PREDICTED: E3 ubiquitin-protein ligase PUB22...   101   5e-20
ref|XP_002308325.1| predicted protein [Populus trichocarpa] gi|2...   101   7e-20

>ref|XP_003535700.1| PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Glycine max]
          Length = 421

 Score =  103 bits (257), Expect = 1e-20
 Identities = 66/110 (60%), Positives = 78/110 (70%), Gaps = 6/110 (5%)
 Frame = +1

Query: 1   RIPTPKPLVDKVQIMKLISNAMIPHLQMRSLRRLKSIAAESERNKRCIESTSGAIEFLAS 180
           RIPTPKP V+K QI KL+ +A   H  +  LRRLKSIA+ SE NKRC+E+ SGA+EFLAS
Sbjct: 87  RIPTPKPPVNKNQISKLLKDAS--HSPLTCLRRLKSIASGSETNKRCMEA-SGAVEFLAS 143

Query: 181 LVKQNCS----TKEMDSN-GDGVEI-TMARDEALGLLHNLQISEAGLKTL 312
           +V  N S    + E DSN G G E+ T A DEAL LLHNL +SE GLKTL
Sbjct: 144 IVINNNSNIDSSNEADSNDGSGFELKTSASDEALSLLHNLHLSEQGLKTL 193


>emb|CAN82979.1| hypothetical protein VITISV_023329 [Vitis vinifera]
          Length = 364

 Score =  102 bits (255), Expect = 2e-20
 Identities = 58/105 (55%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1   RIPTPKPLVDKVQIMKLISNAMIPHLQMRSLRRLKSIAAESERNKRCIESTSGAIEFLAS 180
           RIPTPK  ++KVQI+KL+++A  P LQM+ + +L+++AAES+ NKRCIES +GA+EFLAS
Sbjct: 85  RIPTPKIPINKVQIVKLLNDAKSPQLQMKCIGKLRALAAESDANKRCIES-AGAVEFLAS 143

Query: 181 LV-KQNCSTKEMDSNGDGVEITMARDEALGLLHNLQISEAGLKTL 312
           +V K N +T E +S+  G+E   A  EAL +LH LQ+SEAGL+ L
Sbjct: 144 IVSKANFTTFEEESD-KGLESRSASSEALSILHYLQVSEAGLEKL 187


>ref|XP_002298264.1| predicted protein [Populus trichocarpa] gi|222845522|gb|EEE83069.1|
           predicted protein [Populus trichocarpa]
          Length = 415

 Score =  102 bits (253), Expect = 4e-20
 Identities = 55/106 (51%), Positives = 79/106 (74%), Gaps = 2/106 (1%)
 Frame = +1

Query: 1   RIPTPKPLVDKVQIMKLISNAM-IPHLQMRSLRRLKSIAAESERNKRCIESTSGAIEFLA 177
           RIPTPKPL D+ QI KL+++A   PHL ++SLRRL+SI  ESERN+ C+E  +G ++FLA
Sbjct: 84  RIPTPKPLADRAQISKLLNDAKKFPHLLLKSLRRLRSITLESERNRSCLEE-AGVVDFLA 142

Query: 178 SLVKQNCSTK-EMDSNGDGVEITMARDEALGLLHNLQISEAGLKTL 312
           S++K + ST  ++DS+ +  E T A DEAL +L++L+IS+  LK L
Sbjct: 143 SILKTDNSTSVQIDSDDNESEFTRASDEALNILYHLKISQRQLKNL 188


>ref|XP_003520716.1| PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Glycine max]
          Length = 420

 Score =  101 bits (252), Expect = 5e-20
 Identities = 63/109 (57%), Positives = 77/109 (70%), Gaps = 5/109 (4%)
 Frame = +1

Query: 1   RIPTPKPLVDKVQIMKLISNAMIPHLQMRSLRRLKSIAAESERNKRCIESTSGAIEFLAS 180
           RIPTPKP ++K QI KL+ +A   H  +  LRRLKSIA+ SE NKRC+E+ SG +EFLAS
Sbjct: 87  RIPTPKPPINKNQISKLLKDAS--HSPLTCLRRLKSIASGSETNKRCMEA-SGVVEFLAS 143

Query: 181 LVKQN---CSTKEMDSN-GDGVEI-TMARDEALGLLHNLQISEAGLKTL 312
           +V  N    S+ E DSN G G E+ T A DEAL LLHNL +S+ GLKTL
Sbjct: 144 IVINNNNIVSSNEADSNEGSGFELRTSASDEALSLLHNLHLSDQGLKTL 192


>ref|XP_002308325.1| predicted protein [Populus trichocarpa] gi|222854301|gb|EEE91848.1|
           predicted protein [Populus trichocarpa]
          Length = 413

 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/104 (50%), Positives = 75/104 (72%)
 Frame = +1

Query: 1   RIPTPKPLVDKVQIMKLISNAMIPHLQMRSLRRLKSIAAESERNKRCIESTSGAIEFLAS 180
           RIPTPKP ++K Q+ KL+++A  P  Q++ LR+L+SIA E+E NKRC+E+ +GA+EFL S
Sbjct: 84  RIPTPKPPINKTQVAKLLNDAKSPQQQVKCLRKLRSIANENETNKRCMEA-AGAVEFLVS 142

Query: 181 LVKQNCSTKEMDSNGDGVEITMARDEALGLLHNLQISEAGLKTL 312
           +V    S    +++ DG EI    DEAL +L+ L+ISE+GLK L
Sbjct: 143 VVNNFNSLSFEETSDDGFEIARPGDEALSILYGLEISESGLKNL 186


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