BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037500
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    66   3e-14
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    69   5e-12
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    50   4e-11
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             47   8e-11
gb|EAZ03196.1| hypothetical protein OsI_25347 [Oryza sativa Indi...    53   1e-10

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 66.2 bits (160), Expect(2) = 3e-14
 Identities = 32/64 (50%), Positives = 43/64 (67%)
 Frame = +1

Query: 1   GGPVGYFAMKKGLKQGDPLSPLLFTLAEDTLSRALLYLRTKKHLMPLTTIKSVEAPSHLL 180
           G   GYF+  +G++QGDPLSPLLF LAED LSR+L  L  +  L  +   ++   PSH+L
Sbjct: 307 GSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHIL 366

Query: 181 FADD 192
           +ADD
Sbjct: 367 YADD 370



 Score = 37.0 bits (84), Expect(2) = 3e-14
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 297 GGFNEDRKHTALQELNMVEERLPEKYLGIPLNQGKITRARAAPILDKIKKKLTS 458
           GG ++ R    +  +   +   P  YLG+P+ +GK       PI+DKIK KL++
Sbjct: 377 GGISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSN 430


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 68.9 bits (167), Expect(2) = 5e-12
 Identities = 32/64 (50%), Positives = 43/64 (67%)
 Frame = +1

Query: 1   GGPVGYFAMKKGLKQGDPLSPLLFTLAEDTLSRALLYLRTKKHLMPLTTIKSVEAPSHLL 180
           G  VG+F    G++QGDPLSPLLF L E+ LSRAL    T   L+P++  + V  P+H+L
Sbjct: 633 GKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHIL 692

Query: 181 FADD 192
           +ADD
Sbjct: 693 YADD 696



 Score = 26.6 bits (57), Expect(2) = 5e-12
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 261 QHINKVKSKVFFGGFNEDRKHTALQELNMVEERLPEKYLGIPLNQGK 401
           Q IN  KS+ F       R       L      LP  YLG P+ +GK
Sbjct: 724 QLINNAKSRFFTSAMTGSRVQMISSLLGFNVGSLPFTYLGCPIFRGK 770


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 50.4 bits (119), Expect(2) = 4e-11
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +1

Query: 1   GGPVGYFAMKKGLKQGDPLSPLLFTLAEDTLSRALLYLRTKKHLMPLTTIKSVEAPSHLL 180
           G   G+F   +G++QGDPLSPLLF + E+ LSR++  L  K  +  +   ++   P H  
Sbjct: 368 GAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCF 427

Query: 181 FADD 192
           + DD
Sbjct: 428 YVDD 431



 Score = 42.0 bits (97), Expect(2) = 4e-11
 Identities = 26/70 (37%), Positives = 35/70 (50%)
 Frame = +3

Query: 243 CFGKICQHINKVKSKVFFGGFNEDRKHTALQELNMVEERLPEKYLGIPLNQGKITRARAA 422
           C G+I   +N  KS +F GG  + R +  +  L      LP  YLG P+ +GK       
Sbjct: 456 CSGQI---MNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQ 512

Query: 423 PILDKIKKKL 452
           PI DK+K KL
Sbjct: 513 PIADKVKAKL 522


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 46.6 bits (109), Expect(2) = 8e-11
 Identities = 20/64 (31%), Positives = 37/64 (57%)
 Frame = +3

Query: 267 INKVKSKVFFGGFNEDRKHTALQELNMVEERLPEKYLGIPLNQGKITRARAAPILDKIKK 446
           +N  K ++F GG  +  K      + +     P KYLG+P+N  ++T+A   P+L+KI+ 
Sbjct: 100 VNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRA 159

Query: 447 KLTS 458
           K+++
Sbjct: 160 KVSN 163



 Score = 44.7 bits (104), Expect(2) = 8e-11
 Identities = 28/64 (43%), Positives = 37/64 (57%)
 Frame = +1

Query: 1   GGPVGYFAMKKGLKQGDPLSPLLFTLAEDTLSRALLYLRTKKHLMPLTTIKSVEAPSHLL 180
           G   G F  K+GL+QGDPLSP LF +A + LSR L    +   L  L +  +    +HL+
Sbjct: 8   GELTGLFKGKRGLRQGDPLSPYLFIIAMEVLSRKLDQAASIGQLQ-LHSKCANPLLTHLI 66

Query: 181 FADD 192
           FADD
Sbjct: 67  FADD 70


>gb|EAZ03196.1| hypothetical protein OsI_25347 [Oryza sativa Indica Group]
          Length = 858

 Score = 53.1 bits (126), Expect(2) = 1e-10
 Identities = 31/82 (37%), Positives = 38/82 (46%)
 Frame = +1

Query: 19  FAMKKGLKQGDPLSPLLFTLAEDTLSRALLYLRTKKHLMPLTTIKSVEAPSHLLFADDXX 198
           FA  +GL+QGDPLSP LF    D LS  L     +  + P+   +     SHLLFADD  
Sbjct: 148 FAPTRGLRQGDPLSPFLFLFVADGLSLLLEEQVNQGAISPVKVCRQAPGISHLLFADDTL 207

Query: 199 XXXXXXXXXXXXLNHVLGRYVS 264
                       +  VL RY S
Sbjct: 208 LFFKENADQATKVKEVLNRYAS 229



 Score = 37.7 bits (86), Expect(2) = 1e-10
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 261 QHINKVKSKVFFGGFNEDRKHTALQE-LNMVEERLPEKYLGIPLNQGKITRARAAPILDK 437
           Q IN +K  + FG  +      ++++ L +V     +KYLG P   G++ + R   + DK
Sbjct: 233 QQINPMKCSIMFGEVSPASTQQSIKDILQVVSPNFEDKYLGFPTPDGRMHKGRFQKLQDK 292

Query: 438 IKKKL 452
           I K++
Sbjct: 293 IWKRI 297