BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037448
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containi...   195   3e-48
emb|CAN78051.1| hypothetical protein VITISV_015864 [Vitis vinifera]   194   6e-48
ref|XP_003609638.1| Pentatricopeptide repeat-containing protein ...   193   1e-47
ref|XP_002516898.1| pentatricopeptide repeat-containing protein,...   189   3e-46
ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containi...   185   3e-45

>ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  195 bits (496), Expect = 3e-48
 Identities = 91/137 (66%), Positives = 115/137 (83%)
 Frame = +2

Query: 2   LWDSLLSASRTHGRLDITVEAGQRLIDSNQQVAGAYVTMSNTFAKIGKWDNAYKIRSEMK 181
           LW +LLSASR +GR+DI VEA + LI+SNQQVA AYVTMSNT+A  GKW+N + IR EMK
Sbjct: 403 LWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMK 462

Query: 182 RHGIRKEPGCSWVEIKDATYIFYAGDLSSCTQEAEIATVLKELQLRMKERGYVSASKGLV 361
            +G+ KEPGCSWVEI+D+ Y+FYAGD+S C + +E+A++L+EL+ RMKERGYV  S+GLV
Sbjct: 463 HYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLV 522

Query: 362 FVDVEEEAEETIVGLHS 412
            +DVEEEA+E IVGLHS
Sbjct: 523 SIDVEEEAKEEIVGLHS 539


>emb|CAN78051.1| hypothetical protein VITISV_015864 [Vitis vinifera]
          Length = 231

 Score =  194 bits (493), Expect = 6e-48
 Identities = 91/137 (66%), Positives = 114/137 (83%)
 Frame = +2

Query: 2   LWDSLLSASRTHGRLDITVEAGQRLIDSNQQVAGAYVTMSNTFAKIGKWDNAYKIRSEMK 181
           LW +LLSASR +GR+DI VEA + LI+SNQQVA AYVTMSNT+A  GKW+N + IR EMK
Sbjct: 28  LWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMK 87

Query: 182 RHGIRKEPGCSWVEIKDATYIFYAGDLSSCTQEAEIATVLKELQLRMKERGYVSASKGLV 361
            +G+ KEPGCSWVEI+D+ Y+FYAGD+S C + +E+A++L EL+ RMKERGYV  S+GLV
Sbjct: 88  HYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLXELERRMKERGYVGGSRGLV 147

Query: 362 FVDVEEEAEETIVGLHS 412
            +DVEEEA+E IVGLHS
Sbjct: 148 SIDVEEEAKEEIVGLHS 164


>ref|XP_003609638.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510693|gb|AES91835.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 589

 Score =  193 bits (490), Expect = 1e-47
 Identities = 90/137 (65%), Positives = 115/137 (83%)
 Frame = +2

Query: 2   LWDSLLSASRTHGRLDITVEAGQRLIDSNQQVAGAYVTMSNTFAKIGKWDNAYKIRSEMK 181
           LW +LLSASR HGR+DI +EA  R+I+SNQQVA AYVT+SNT+A  G W+NA+ +RSEMK
Sbjct: 386 LWGTLLSASRLHGRVDIAIEASNRVIESNQQVAAAYVTLSNTYALAGDWENAHNLRSEMK 445

Query: 182 RHGIRKEPGCSWVEIKDATYIFYAGDLSSCTQEAEIATVLKELQLRMKERGYVSASKGLV 361
           R G+ KEPG SW+EIKD+TY+F+AGDLS C+Q+ E+ ++L+EL+ RMKERG+V  + GLV
Sbjct: 446 RTGVYKEPGSSWIEIKDSTYLFHAGDLSKCSQKRELLSLLRELEGRMKERGHVGVTTGLV 505

Query: 362 FVDVEEEAEETIVGLHS 412
           FVDVEEEA+E IV LHS
Sbjct: 506 FVDVEEEAKEEIVSLHS 522


>ref|XP_002516898.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543986|gb|EEF45512.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 406

 Score =  189 bits (479), Expect = 3e-46
 Identities = 92/137 (67%), Positives = 112/137 (81%)
 Frame = +2

Query: 2   LWDSLLSASRTHGRLDITVEAGQRLIDSNQQVAGAYVTMSNTFAKIGKWDNAYKIRSEMK 181
           LW +LLSASR  GR+D+ VEA + LI+SNQQVAG YVT+SNT+A  G+W+NAY +RS+MK
Sbjct: 204 LWGTLLSASRLQGRVDVAVEASKWLIESNQQVAGTYVTLSNTYALAGEWENAYYLRSQMK 263

Query: 182 RHGIRKEPGCSWVEIKDATYIFYAGDLSSCTQEAEIATVLKELQLRMKERGYVSASKGLV 361
           R G+ KEPGCSWVEIKD+TY+FYAG+L SC +  E+   LKEL+ RMKERGYV  S GLV
Sbjct: 264 RVGVYKEPGCSWVEIKDSTYVFYAGNL-SCERGNEVLNFLKELERRMKERGYVGGSMGLV 322

Query: 362 FVDVEEEAEETIVGLHS 412
           FVDVE+EA+E IV LHS
Sbjct: 323 FVDVEQEAKEEIVSLHS 339


>ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  185 bits (470), Expect = 3e-45
 Identities = 88/137 (64%), Positives = 112/137 (81%)
 Frame = +2

Query: 2   LWDSLLSASRTHGRLDITVEAGQRLIDSNQQVAGAYVTMSNTFAKIGKWDNAYKIRSEMK 181
           LW +LLSASR +GR+DI +EA  RLI+SNQQVAGAYVT+SN +A  G W+NA+ +RSEMK
Sbjct: 400 LWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAHNLRSEMK 459

Query: 182 RHGIRKEPGCSWVEIKDATYIFYAGDLSSCTQEAEIATVLKELQLRMKERGYVSASKGLV 361
             G+ KEPG SW+EIK++TY+F+AGD+S  TQ  EI ++L+EL+ RMK RGYV  +KGLV
Sbjct: 460 HTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYVGGTKGLV 519

Query: 362 FVDVEEEAEETIVGLHS 412
           FVDVEEEA+E IV +HS
Sbjct: 520 FVDVEEEAKEEIVSMHS 536